Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02765 and BWI76_RS02770 are separated by 185 nucleotides BWI76_RS02770 and BWI76_RS02775 are separated by 209 nucleotides
BWI76_RS02765: BWI76_RS02765 - membrane protein, at 560,837 to 562,180
_RS02765
BWI76_RS02770: BWI76_RS02770 - peptide-methionine (S)-S-oxide reductase, at 562,366 to 563,004
_RS02770
BWI76_RS02775: BWI76_RS02775 - outer membrane protein assembly factor, at 563,214 to 564,947
_RS02775
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 561.427 kb on + strand, within BWI76_RS02765 at 561.493 kb on - strand, within BWI76_RS02765 at 561.691 kb on + strand, within BWI76_RS02765 at 561.795 kb on + strand, within BWI76_RS02765 at 561.878 kb on + strand, within BWI76_RS02765 at 561.914 kb on + strand, within BWI76_RS02765 at 561.922 kb on + strand, within BWI76_RS02765 at 562.013 kb on - strand at 562.050 kb on + strand at 562.050 kb on + strand at 562.050 kb on + strand at 562.096 kb on - strand at 562.284 kb on + strand at 562.284 kb on + strand at 562.292 kb on - strand at 562.292 kb on - strand at 562.539 kb on + strand, within BWI76_RS02770 at 562.572 kb on - strand, within BWI76_RS02770 at 562.572 kb on - strand, within BWI76_RS02770 at 562.636 kb on - strand, within BWI76_RS02770 at 562.636 kb on - strand, within BWI76_RS02770 at 562.672 kb on - strand, within BWI76_RS02770 at 562.685 kb on - strand, within BWI76_RS02770 at 562.741 kb on + strand, within BWI76_RS02770 at 562.741 kb on + strand, within BWI76_RS02770 at 562.747 kb on - strand, within BWI76_RS02770 at 562.799 kb on + strand, within BWI76_RS02770 at 562.833 kb on - strand, within BWI76_RS02770 at 562.850 kb on - strand, within BWI76_RS02770 at 562.916 kb on + strand, within BWI76_RS02770 at 562.926 kb on - strand, within BWI76_RS02770 at 562.998 kb on + strand at 563.012 kb on - strand at 563.038 kb on + strand at 563.132 kb on + strand at 563.156 kb on + strand at 563.186 kb on - strand at 563.579 kb on - strand, within BWI76_RS02775 at 563.782 kb on + strand, within BWI76_RS02775 at 563.797 kb on + strand, within BWI76_RS02775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 561,427 + BWI76_RS02765 0.44 -2.0 561,493 - BWI76_RS02765 0.49 -0.3 561,691 + BWI76_RS02765 0.64 -2.5 561,795 + BWI76_RS02765 0.71 -0.2 561,878 + BWI76_RS02765 0.77 +0.7 561,914 + BWI76_RS02765 0.80 -0.1 561,922 + BWI76_RS02765 0.81 -0.4 562,013 - +2.4 562,050 + +0.4 562,050 + +0.4 562,050 + +0.7 562,096 - -2.0 562,284 + -0.2 562,284 + -0.6 562,292 - -0.4 562,292 - -0.1 562,539 + BWI76_RS02770 0.27 -0.8 562,572 - BWI76_RS02770 0.32 -0.9 562,572 - BWI76_RS02770 0.32 +0.7 562,636 - BWI76_RS02770 0.42 -1.3 562,636 - BWI76_RS02770 0.42 -2.3 562,672 - BWI76_RS02770 0.48 +0.1 562,685 - BWI76_RS02770 0.50 -0.7 562,741 + BWI76_RS02770 0.59 -1.4 562,741 + BWI76_RS02770 0.59 -0.7 562,747 - BWI76_RS02770 0.60 -0.4 562,799 + BWI76_RS02770 0.68 -0.3 562,833 - BWI76_RS02770 0.73 +3.4 562,850 - BWI76_RS02770 0.76 -0.6 562,916 + BWI76_RS02770 0.86 -0.6 562,926 - BWI76_RS02770 0.88 -1.6 562,998 + +0.2 563,012 - -0.1 563,038 + -1.1 563,132 + +0.1 563,156 + +0.1 563,186 - +0.9 563,579 - BWI76_RS02775 0.21 -2.1 563,782 + BWI76_RS02775 0.33 -0.2 563,797 + BWI76_RS02775 0.34 -0.5
Or see this region's nucleotide sequence