Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30990 and AZOBR_RS30995 are separated by 3 nucleotides AZOBR_RS30995 and AZOBR_RS31000 are separated by 74 nucleotides AZOBR_RS31000 and AZOBR_RS31005 are separated by 336 nucleotides
AZOBR_RS30990: AZOBR_RS30990 - lipoate-protein ligase B, at 320,290 to 321,018
_RS30990
AZOBR_RS30995: AZOBR_RS30995 - hypothetical protein, at 321,022 to 321,540
_RS30995
AZOBR_RS31000: AZOBR_RS31000 - aldehyde dehydrogenase, at 321,615 to 323,054
_RS31000
AZOBR_RS31005: AZOBR_RS31005 - peptide ABC transporter substrate-binding protein, at 323,391 to 324,989
_RS31005
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 321.128 kb on + strand, within AZOBR_RS30995 at 321.129 kb on - strand, within AZOBR_RS30995 at 321.384 kb on - strand, within AZOBR_RS30995 at 321.616 kb on + strand at 321.710 kb on - strand at 321.815 kb on - strand, within AZOBR_RS31000 at 321.821 kb on - strand, within AZOBR_RS31000 at 321.836 kb on - strand, within AZOBR_RS31000 at 321.836 kb on - strand, within AZOBR_RS31000 at 321.836 kb on - strand, within AZOBR_RS31000 at 321.836 kb on - strand at 321.970 kb on + strand, within AZOBR_RS31000 at 321.970 kb on + strand, within AZOBR_RS31000 at 321.971 kb on - strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.192 kb on + strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.193 kb on - strand, within AZOBR_RS31000 at 322.246 kb on - strand, within AZOBR_RS31000 at 322.450 kb on + strand, within AZOBR_RS31000 at 322.450 kb on + strand, within AZOBR_RS31000 at 322.450 kb on + strand, within AZOBR_RS31000 at 322.450 kb on + strand, within AZOBR_RS31000 at 322.451 kb on - strand, within AZOBR_RS31000 at 322.451 kb on - strand, within AZOBR_RS31000 at 322.451 kb on - strand, within AZOBR_RS31000 at 322.519 kb on + strand, within AZOBR_RS31000 at 323.032 kb on + strand at 323.032 kb on + strand at 323.032 kb on + strand at 323.033 kb on - strand at 323.214 kb on + strand at 323.214 kb on + strand at 323.214 kb on + strand at 323.215 kb on - strand at 323.215 kb on - strand at 323.215 kb on - strand at 323.305 kb on - strand at 323.317 kb on + strand at 323.318 kb on - strand at 323.318 kb on - strand at 323.318 kb on - strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.345 kb on - strand at 323.345 kb on - strand at 323.345 kb on - strand at 323.345 kb on - strand at 323.345 kb on - strand at 323.345 kb on - strand at 323.345 kb on - strand at 323.511 kb on + strand at 323.706 kb on + strand, within AZOBR_RS31005 at 323.760 kb on + strand, within AZOBR_RS31005 at 323.761 kb on - strand, within AZOBR_RS31005 at 323.761 kb on - strand, within AZOBR_RS31005 at 323.761 kb on - strand, within AZOBR_RS31005 at 323.762 kb on + strand, within AZOBR_RS31005 at 323.762 kb on + strand, within AZOBR_RS31005 at 323.762 kb on + strand, within AZOBR_RS31005 at 323.763 kb on - strand, within AZOBR_RS31005 at 323.763 kb on - strand, within AZOBR_RS31005 at 324.003 kb on + strand, within AZOBR_RS31005 at 324.003 kb on + strand, within AZOBR_RS31005 at 324.004 kb on - strand, within AZOBR_RS31005 at 324.004 kb on - strand, within AZOBR_RS31005
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 321,128 + AZOBR_RS30995 0.20 -0.9 321,129 - AZOBR_RS30995 0.21 +0.4 321,384 - AZOBR_RS30995 0.70 +0.5 321,616 + +0.1 321,710 - -0.1 321,815 - AZOBR_RS31000 0.14 -2.5 321,821 - AZOBR_RS31000 0.14 -0.9 321,836 - AZOBR_RS31000 0.15 +0.5 321,836 - AZOBR_RS31000 0.15 -1.7 321,836 - AZOBR_RS31000 0.15 -0.5 321,836 - +1.3 321,970 + AZOBR_RS31000 0.25 +0.2 321,970 + AZOBR_RS31000 0.25 +0.7 321,971 - AZOBR_RS31000 0.25 -0.4 322,192 + AZOBR_RS31000 0.40 +0.2 322,192 + AZOBR_RS31000 0.40 +0.6 322,192 + AZOBR_RS31000 0.40 -1.3 322,192 + AZOBR_RS31000 0.40 -0.3 322,192 + AZOBR_RS31000 0.40 +0.0 322,192 + AZOBR_RS31000 0.40 +1.8 322,192 + AZOBR_RS31000 0.40 -1.9 322,192 + AZOBR_RS31000 0.40 -0.9 322,192 + AZOBR_RS31000 0.40 +0.1 322,192 + AZOBR_RS31000 0.40 -0.1 322,192 + AZOBR_RS31000 0.40 -0.5 322,192 + AZOBR_RS31000 0.40 -0.2 322,193 - AZOBR_RS31000 0.40 +0.0 322,193 - AZOBR_RS31000 0.40 -0.3 322,193 - AZOBR_RS31000 0.40 -0.5 322,193 - AZOBR_RS31000 0.40 -1.2 322,193 - AZOBR_RS31000 0.40 +0.2 322,193 - AZOBR_RS31000 0.40 -1.6 322,193 - AZOBR_RS31000 0.40 +0.2 322,193 - AZOBR_RS31000 0.40 +1.3 322,193 - AZOBR_RS31000 0.40 +0.9 322,193 - AZOBR_RS31000 0.40 -1.1 322,193 - AZOBR_RS31000 0.40 +0.3 322,193 - AZOBR_RS31000 0.40 -0.1 322,246 - AZOBR_RS31000 0.44 -0.3 322,450 + AZOBR_RS31000 0.58 -1.2 322,450 + AZOBR_RS31000 0.58 -0.2 322,450 + AZOBR_RS31000 0.58 -0.6 322,450 + AZOBR_RS31000 0.58 -1.0 322,451 - AZOBR_RS31000 0.58 -1.5 322,451 - AZOBR_RS31000 0.58 -2.8 322,451 - AZOBR_RS31000 0.58 +0.1 322,519 + AZOBR_RS31000 0.63 -0.9 323,032 + -1.2 323,032 + -0.5 323,032 + -0.7 323,033 - +0.5 323,214 + -0.9 323,214 + -0.0 323,214 + +0.7 323,215 - -0.2 323,215 - +0.3 323,215 - -0.5 323,305 - +0.8 323,317 + +0.3 323,318 - +0.1 323,318 - -0.4 323,318 - -0.1 323,344 + +0.2 323,344 + -0.0 323,344 + +1.1 323,345 - -0.5 323,345 - -0.7 323,345 - +0.3 323,345 - -0.5 323,345 - +2.3 323,345 - +0.1 323,345 - +1.0 323,511 + +0.2 323,706 + AZOBR_RS31005 0.20 +0.5 323,760 + AZOBR_RS31005 0.23 +0.4 323,761 - AZOBR_RS31005 0.23 +0.6 323,761 - AZOBR_RS31005 0.23 -0.7 323,761 - AZOBR_RS31005 0.23 -3.1 323,762 + AZOBR_RS31005 0.23 +1.7 323,762 + AZOBR_RS31005 0.23 -1.3 323,762 + AZOBR_RS31005 0.23 +0.1 323,763 - AZOBR_RS31005 0.23 -1.0 323,763 - AZOBR_RS31005 0.23 -0.2 324,003 + AZOBR_RS31005 0.38 -0.0 324,003 + AZOBR_RS31005 0.38 -0.5 324,004 - AZOBR_RS31005 0.38 -1.0 324,004 - AZOBR_RS31005 0.38 -0.5
Or see this region's nucleotide sequence