Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29925 and AZOBR_RS29930 are separated by 125 nucleotides AZOBR_RS29930 and AZOBR_RS29935 are separated by 20 nucleotides AZOBR_RS29935 and AZOBR_RS29940 are separated by 13 nucleotides AZOBR_RS29940 and AZOBR_RS29945 are separated by 147 nucleotides AZOBR_RS29945 and AZOBR_RS29950 are separated by 1 nucleotides
AZOBR_RS29925: AZOBR_RS29925 - ATP synthase, at 57,119 to 58,459
_RS29925
AZOBR_RS29930: AZOBR_RS29930 - flagellar basal body rod protein FlgG, at 58,585 to 58,977
_RS29930
AZOBR_RS29935: AZOBR_RS29935 - flagellar basal-body rod protein FlgC, at 58,998 to 59,417
_RS29935
AZOBR_RS29940: AZOBR_RS29940 - flagellar basal body protein FliE, at 59,431 to 59,793
_RS29940
AZOBR_RS29945: AZOBR_RS29945 - flagellar biosynthesis protein FliQ, at 59,941 to 60,207
_RS29945
AZOBR_RS29950: AZOBR_RS29950 - transglycosylase, at 60,209 to 60,979
_RS29950
Position (kb) 59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.636 kb on + strand, within AZOBR_RS29930 at 58.637 kb on - strand, within AZOBR_RS29930 at 59.277 kb on + strand, within AZOBR_RS29935 at 59.277 kb on + strand, within AZOBR_RS29935 at 59.765 kb on - strand at 59.929 kb on - strand at 60.148 kb on + strand, within AZOBR_RS29945 at 60.148 kb on + strand, within AZOBR_RS29945 at 60.149 kb on - strand, within AZOBR_RS29945 at 60.149 kb on - strand, within AZOBR_RS29945 at 60.166 kb on + strand, within AZOBR_RS29945 at 60.167 kb on - strand, within AZOBR_RS29945 at 60.512 kb on + strand, within AZOBR_RS29950 at 60.513 kb on - strand, within AZOBR_RS29950 at 60.607 kb on + strand, within AZOBR_RS29950 at 60.607 kb on + strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.608 kb on - strand, within AZOBR_RS29950 at 60.737 kb on + strand, within AZOBR_RS29950
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 58,636 + AZOBR_RS29930 0.13 +0.5 58,637 - AZOBR_RS29930 0.13 -1.9 59,277 + AZOBR_RS29935 0.66 -0.1 59,277 + AZOBR_RS29935 0.66 +1.9 59,765 - -0.1 59,929 - +0.7 60,148 + AZOBR_RS29945 0.78 -1.1 60,148 + AZOBR_RS29945 0.78 -0.6 60,149 - AZOBR_RS29945 0.78 +1.5 60,149 - AZOBR_RS29945 0.78 -0.2 60,166 + AZOBR_RS29945 0.84 +0.8 60,167 - AZOBR_RS29945 0.85 +0.3 60,512 + AZOBR_RS29950 0.39 +0.7 60,513 - AZOBR_RS29950 0.39 -0.1 60,607 + AZOBR_RS29950 0.52 -1.1 60,607 + AZOBR_RS29950 0.52 +0.0 60,608 - AZOBR_RS29950 0.52 -0.6 60,608 - AZOBR_RS29950 0.52 +1.8 60,608 - AZOBR_RS29950 0.52 -1.5 60,608 - AZOBR_RS29950 0.52 +1.1 60,608 - AZOBR_RS29950 0.52 -0.3 60,608 - AZOBR_RS29950 0.52 +0.2 60,608 - AZOBR_RS29950 0.52 +0.3 60,608 - AZOBR_RS29950 0.52 +0.6 60,737 + AZOBR_RS29950 0.68 +0.6
Or see this region's nucleotide sequence