Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29845 and AZOBR_RS29850 are separated by 5 nucleotides AZOBR_RS29850 and AZOBR_RS29855 overlap by 4 nucleotides AZOBR_RS29855 and AZOBR_RS29860 are separated by 4 nucleotides
AZOBR_RS29845: AZOBR_RS29845 - oxidoreductase, at 43,080 to 44,108
_RS29845
AZOBR_RS29850: AZOBR_RS29850 - ketohydroxyglutarate aldolase, at 44,114 to 44,749
_RS29850
AZOBR_RS29855: AZOBR_RS29855 - GntR family transcriptional regulator, at 44,746 to 45,513
_RS29855
AZOBR_RS29860: AZOBR_RS29860 - ketodeoxygluconokinase, at 45,518 to 46,450
_RS29860
Position (kb) 44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.546 kb on + strand, within AZOBR_RS29845 at 43.546 kb on + strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 44.115 kb on + strand at 44.115 kb on + strand at 44.425 kb on - strand, within AZOBR_RS29850 at 44.774 kb on + strand at 44.774 kb on + strand at 44.774 kb on + strand at 44.775 kb on - strand at 44.775 kb on - strand at 44.775 kb on - strand at 44.775 kb on - strand at 45.474 kb on + strand at 45.475 kb on - strand at 45.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 43,546 + AZOBR_RS29845 0.45 +0.9 43,546 + AZOBR_RS29845 0.45 +0.0 43,547 - AZOBR_RS29845 0.45 -1.1 43,547 - AZOBR_RS29845 0.45 -1.4 43,547 - AZOBR_RS29845 0.45 -1.1 43,547 - AZOBR_RS29845 0.45 +0.2 43,627 + AZOBR_RS29845 0.53 -0.6 43,627 + AZOBR_RS29845 0.53 +0.7 43,628 - AZOBR_RS29845 0.53 -0.0 43,628 - AZOBR_RS29845 0.53 -0.9 43,630 + AZOBR_RS29845 0.53 +0.2 43,630 + AZOBR_RS29845 0.53 +0.2 43,631 - AZOBR_RS29845 0.54 -0.9 43,631 - AZOBR_RS29845 0.54 -1.1 43,631 - AZOBR_RS29845 0.54 -0.9 44,115 + -1.2 44,115 + -0.4 44,425 - AZOBR_RS29850 0.49 -1.0 44,774 + -0.5 44,774 + +0.6 44,774 + +3.2 44,775 - +0.4 44,775 - +0.1 44,775 - +0.6 44,775 - +0.8 45,474 + -0.0 45,475 - -2.8 45,475 - +0.3
Or see this region's nucleotide sequence