Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26365 and AZOBR_RS26370 are separated by 185 nucleotides AZOBR_RS26370 and AZOBR_RS26375 are separated by 42 nucleotides AZOBR_RS26375 and AZOBR_RS26380 are separated by 244 nucleotides
AZOBR_RS26365: AZOBR_RS26365 - cytosine deaminase, at 61,807 to 63,078
_RS26365
AZOBR_RS26370: AZOBR_RS26370 - alpha/beta hydrolase, at 63,264 to 64,028
_RS26370
AZOBR_RS26375: AZOBR_RS26375 - hypothetical protein, at 64,071 to 64,952
_RS26375
AZOBR_RS26380: AZOBR_RS26380 - GntR family transcriptional regulator, at 65,197 to 65,904
_RS26380
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.508 kb on + strand, within AZOBR_RS26370 at 63.626 kb on + strand, within AZOBR_RS26370 at 63.627 kb on - strand, within AZOBR_RS26370 at 63.627 kb on - strand, within AZOBR_RS26370 at 63.783 kb on + strand, within AZOBR_RS26370 at 63.783 kb on + strand, within AZOBR_RS26370 at 63.783 kb on + strand, within AZOBR_RS26370 at 63.783 kb on + strand, within AZOBR_RS26370 at 63.784 kb on - strand, within AZOBR_RS26370 at 63.784 kb on - strand, within AZOBR_RS26370 at 63.784 kb on - strand, within AZOBR_RS26370 at 64.028 kb on + strand at 64.029 kb on - strand at 64.311 kb on + strand, within AZOBR_RS26375 at 64.407 kb on - strand, within AZOBR_RS26375 at 64.454 kb on - strand, within AZOBR_RS26375 at 64.454 kb on - strand, within AZOBR_RS26375 at 64.471 kb on + strand, within AZOBR_RS26375 at 64.702 kb on + strand, within AZOBR_RS26375 at 64.702 kb on + strand, within AZOBR_RS26375 at 64.819 kb on + strand, within AZOBR_RS26375 at 65.704 kb on + strand, within AZOBR_RS26380 at 65.704 kb on + strand, within AZOBR_RS26380 at 65.789 kb on - strand, within AZOBR_RS26380
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 63,508 + AZOBR_RS26370 0.32 -0.2 63,626 + AZOBR_RS26370 0.47 +0.1 63,627 - AZOBR_RS26370 0.47 -2.7 63,627 - AZOBR_RS26370 0.47 +2.3 63,783 + AZOBR_RS26370 0.68 +0.0 63,783 + AZOBR_RS26370 0.68 +0.0 63,783 + AZOBR_RS26370 0.68 -1.5 63,783 + AZOBR_RS26370 0.68 +2.3 63,784 - AZOBR_RS26370 0.68 +2.3 63,784 - AZOBR_RS26370 0.68 -0.7 63,784 - AZOBR_RS26370 0.68 +0.5 64,028 + -1.1 64,029 - -0.7 64,311 + AZOBR_RS26375 0.27 -0.5 64,407 - AZOBR_RS26375 0.38 -0.8 64,454 - AZOBR_RS26375 0.43 -0.8 64,454 - AZOBR_RS26375 0.43 -0.9 64,471 + AZOBR_RS26375 0.45 -0.0 64,702 + AZOBR_RS26375 0.72 +0.5 64,702 + AZOBR_RS26375 0.72 -0.3 64,819 + AZOBR_RS26375 0.85 +0.6 65,704 + AZOBR_RS26380 0.72 -3.1 65,704 + AZOBR_RS26380 0.72 -2.2 65,789 - AZOBR_RS26380 0.84 -2.6
Or see this region's nucleotide sequence