Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15625 and AZOBR_RS15630 are separated by 396 nucleotides AZOBR_RS15630 and AZOBR_RS15635 are separated by 415 nucleotides AZOBR_RS15635 and AZOBR_RS15640 are separated by 162 nucleotides
AZOBR_RS15625: AZOBR_RS15625 - deoxycytidine triphosphate deaminase, at 262,249 to 262,833
_RS15625
AZOBR_RS15630: AZOBR_RS15630 - hypothetical protein, at 263,230 to 263,463
_RS15630
AZOBR_RS15635: AZOBR_RS15635 - hypothetical protein, at 263,879 to 264,283
_RS15635
AZOBR_RS15640: AZOBR_RS15640 - membrane protein, at 264,446 to 265,195
_RS15640
Position (kb) 263
264 Strain fitness (log2 ratio) -1
0
1 at 262.942 kb on - strand at 262.942 kb on - strand at 262.942 kb on - strand at 262.942 kb on - strand at 262.942 kb on - strand at 262.942 kb on - strand at 263.200 kb on + strand at 263.830 kb on + strand at 264.113 kb on + strand, within AZOBR_RS15635 at 264.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 262,942 - -1.2 262,942 - +0.3 262,942 - +0.1 262,942 - -1.5 262,942 - -0.4 262,942 - +0.1 263,200 + +1.3 263,830 + -1.3 264,113 + AZOBR_RS15635 0.58 -0.5 264,412 - +1.3
Or see this region's nucleotide sequence