Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07955 and AZOBR_RS07960 are separated by 79 nucleotides AZOBR_RS07960 and AZOBR_RS07965 are separated by 255 nucleotides
AZOBR_RS07955: AZOBR_RS07955 - tartronate semialdehyde reductase, at 1,677,470 to 1,678,378
_RS07955
AZOBR_RS07960: AZOBR_RS07960 - hydroxypyruvate isomerase, at 1,678,458 to 1,679,255
_RS07960
AZOBR_RS07965: AZOBR_RS07965 - glyoxylate carboligase, at 1,679,511 to 1,681,280
_RS07965
Position (kb) 1678
1679
1680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1678.038 kb on + strand, within AZOBR_RS07955 at 1678.293 kb on + strand at 1678.534 kb on + strand at 1678.535 kb on - strand at 1678.559 kb on - strand, within AZOBR_RS07960 at 1678.594 kb on + strand, within AZOBR_RS07960 at 1678.594 kb on + strand, within AZOBR_RS07960 at 1678.594 kb on + strand, within AZOBR_RS07960 at 1678.595 kb on - strand, within AZOBR_RS07960 at 1678.717 kb on + strand, within AZOBR_RS07960 at 1678.717 kb on + strand, within AZOBR_RS07960 at 1678.727 kb on - strand, within AZOBR_RS07960 at 1678.795 kb on + strand, within AZOBR_RS07960 at 1678.795 kb on + strand, within AZOBR_RS07960 at 1678.796 kb on - strand, within AZOBR_RS07960 at 1678.978 kb on + strand, within AZOBR_RS07960 at 1679.155 kb on + strand, within AZOBR_RS07960 at 1679.155 kb on + strand, within AZOBR_RS07960 at 1679.156 kb on - strand, within AZOBR_RS07960 at 1679.156 kb on - strand, within AZOBR_RS07960 at 1679.221 kb on + strand at 1679.221 kb on + strand at 1679.221 kb on + strand at 1679.761 kb on + strand, within AZOBR_RS07965 at 1679.858 kb on - strand, within AZOBR_RS07965 at 1679.884 kb on + strand, within AZOBR_RS07965 at 1679.884 kb on + strand, within AZOBR_RS07965 at 1679.884 kb on + strand, within AZOBR_RS07965 at 1679.884 kb on + strand, within AZOBR_RS07965 at 1679.941 kb on + strand, within AZOBR_RS07965 at 1679.941 kb on + strand, within AZOBR_RS07965 at 1680.061 kb on + strand, within AZOBR_RS07965 at 1680.061 kb on + strand, within AZOBR_RS07965 at 1680.061 kb on + strand, within AZOBR_RS07965 at 1680.061 kb on + strand, within AZOBR_RS07965 at 1680.062 kb on - strand, within AZOBR_RS07965 at 1680.062 kb on - strand, within AZOBR_RS07965 at 1680.115 kb on + strand, within AZOBR_RS07965 at 1680.115 kb on + strand, within AZOBR_RS07965 at 1680.116 kb on - strand, within AZOBR_RS07965 at 1680.116 kb on - strand, within AZOBR_RS07965 at 1680.154 kb on + strand, within AZOBR_RS07965
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 1,678,038 + AZOBR_RS07955 0.62 -1.4 1,678,293 + +1.4 1,678,534 + -0.3 1,678,535 - -1.7 1,678,559 - AZOBR_RS07960 0.13 +0.7 1,678,594 + AZOBR_RS07960 0.17 -2.6 1,678,594 + AZOBR_RS07960 0.17 -2.2 1,678,594 + AZOBR_RS07960 0.17 +0.1 1,678,595 - AZOBR_RS07960 0.17 -0.5 1,678,717 + AZOBR_RS07960 0.32 -0.2 1,678,717 + AZOBR_RS07960 0.32 +0.5 1,678,727 - AZOBR_RS07960 0.34 -0.3 1,678,795 + AZOBR_RS07960 0.42 -1.7 1,678,795 + AZOBR_RS07960 0.42 +0.3 1,678,796 - AZOBR_RS07960 0.42 -0.5 1,678,978 + AZOBR_RS07960 0.65 -0.2 1,679,155 + AZOBR_RS07960 0.87 -0.9 1,679,155 + AZOBR_RS07960 0.87 +0.3 1,679,156 - AZOBR_RS07960 0.87 +0.4 1,679,156 - AZOBR_RS07960 0.87 +1.2 1,679,221 + +0.8 1,679,221 + +0.2 1,679,221 + -0.0 1,679,761 + AZOBR_RS07965 0.14 +0.7 1,679,858 - AZOBR_RS07965 0.20 +1.4 1,679,884 + AZOBR_RS07965 0.21 +0.8 1,679,884 + AZOBR_RS07965 0.21 -1.0 1,679,884 + AZOBR_RS07965 0.21 -1.2 1,679,884 + AZOBR_RS07965 0.21 -0.3 1,679,941 + AZOBR_RS07965 0.24 -1.1 1,679,941 + AZOBR_RS07965 0.24 +0.0 1,680,061 + AZOBR_RS07965 0.31 +0.6 1,680,061 + AZOBR_RS07965 0.31 +2.5 1,680,061 + AZOBR_RS07965 0.31 +0.0 1,680,061 + AZOBR_RS07965 0.31 -0.3 1,680,062 - AZOBR_RS07965 0.31 -1.0 1,680,062 - AZOBR_RS07965 0.31 -1.5 1,680,115 + AZOBR_RS07965 0.34 -0.4 1,680,115 + AZOBR_RS07965 0.34 -0.6 1,680,116 - AZOBR_RS07965 0.34 +0.3 1,680,116 - AZOBR_RS07965 0.34 +1.0 1,680,154 + AZOBR_RS07965 0.36 +0.4
Or see this region's nucleotide sequence