Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03190 and AZOBR_RS03195 are separated by 73 nucleotides AZOBR_RS03195 and AZOBR_RS03200 are separated by 165 nucleotides AZOBR_RS03200 and AZOBR_RS03205 are separated by 242 nucleotides AZOBR_RS03205 and AZOBR_RS03210 are separated by 283 nucleotides
AZOBR_RS03190: AZOBR_RS03190 - aerobic cobaltochelatase subunit CobS, at 679,173 to 680,177
_RS03190
AZOBR_RS03195: AZOBR_RS03195 - molecular chaperone DnaJ, at 680,251 to 680,835
_RS03195
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
AZOBR_RS03205: AZOBR_RS03205 - hypothetical protein, at 681,516 to 681,857
_RS03205
AZOBR_RS03210: AZOBR_RS03210 - hypothetical protein, at 682,141 to 682,755
_RS03210
Position (kb) 681
682 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 680.184 kb on + strand at 680.188 kb on + strand at 680.188 kb on + strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.262 kb on - strand at 680.282 kb on + strand at 680.282 kb on + strand at 680.283 kb on - strand at 680.646 kb on - strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.666 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.799 kb on - strand at 680.813 kb on + strand at 680.844 kb on + strand at 680.845 kb on - strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.193 kb on + strand, within AZOBR_RS03200 at 681.194 kb on - strand, within AZOBR_RS03200 at 681.342 kb on + strand at 681.343 kb on - strand at 681.346 kb on + strand at 681.346 kb on + strand at 681.426 kb on + strand at 681.515 kb on + strand at 681.545 kb on - strand at 682.050 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.079 kb on - strand at 682.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 680,184 + -1.2 680,188 + -5.1 680,188 + -1.5 680,189 - -2.1 680,189 - -1.9 680,189 - -3.0 680,189 - -2.0 680,261 + +1.5 680,261 + -2.7 680,261 + -2.2 680,262 - -0.4 680,282 + -0.6 680,282 + +1.0 680,283 - -0.4 680,646 - AZOBR_RS03195 0.68 +0.6 680,648 + AZOBR_RS03195 0.68 -0.3 680,648 + AZOBR_RS03195 0.68 -0.1 680,649 - AZOBR_RS03195 0.68 -0.3 680,649 - AZOBR_RS03195 0.68 +0.1 680,666 + AZOBR_RS03195 0.71 -2.4 680,696 + AZOBR_RS03195 0.76 -1.2 680,696 + AZOBR_RS03195 0.76 -1.2 680,697 - AZOBR_RS03195 0.76 +1.7 680,697 - AZOBR_RS03195 0.76 -1.2 680,699 + AZOBR_RS03195 0.77 +0.2 680,699 + AZOBR_RS03195 0.77 -0.4 680,699 + AZOBR_RS03195 0.77 -1.0 680,799 - -0.7 680,813 + +0.1 680,844 + +0.2 680,845 - -3.5 681,007 + +0.8 681,007 + +0.2 681,007 + +0.7 681,008 - -0.8 681,008 - +0.2 681,008 - +0.8 681,008 - +0.2 681,193 + AZOBR_RS03200 0.70 -0.5 681,194 - AZOBR_RS03200 0.71 -0.3 681,342 + +1.9 681,343 - -0.4 681,346 + -1.6 681,346 + +0.1 681,426 + +0.3 681,515 + +0.9 681,545 - -1.2 682,050 + +0.5 682,063 + +0.4 682,063 + -0.2 682,063 + +1.2 682,063 + -0.9 682,064 - -0.1 682,064 - +0.1 682,064 - +0.6 682,079 - -3.0 682,175 + +0.9
Or see this region's nucleotide sequence