Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02315 and AZOBR_RS02320 are separated by 168 nucleotides AZOBR_RS02320 and AZOBR_RS02325 are separated by 88 nucleotides
AZOBR_RS02315: AZOBR_RS02315 - ATPase AAA, at 477,514 to 479,046
_RS02315
AZOBR_RS02320: AZOBR_RS02320 - amidase, at 479,215 to 479,961
_RS02320
AZOBR_RS02325: AZOBR_RS02325 - ABC transporter substrate-binding protein, at 480,050 to 481,561
_RS02325
Position (kb) 479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.083 kb on - strand at 479.254 kb on + strand at 479.254 kb on + strand at 479.255 kb on - strand at 479.488 kb on + strand, within AZOBR_RS02320 at 479.488 kb on + strand, within AZOBR_RS02320 at 479.488 kb on + strand, within AZOBR_RS02320 at 479.488 kb on + strand, within AZOBR_RS02320 at 479.489 kb on - strand, within AZOBR_RS02320 at 479.489 kb on - strand, within AZOBR_RS02320 at 479.489 kb on - strand, within AZOBR_RS02320 at 479.578 kb on + strand, within AZOBR_RS02320 at 479.579 kb on - strand, within AZOBR_RS02320 at 479.587 kb on + strand, within AZOBR_RS02320 at 479.746 kb on + strand, within AZOBR_RS02320 at 479.746 kb on + strand, within AZOBR_RS02320 at 479.746 kb on + strand, within AZOBR_RS02320 at 479.747 kb on - strand, within AZOBR_RS02320 at 479.747 kb on - strand, within AZOBR_RS02320 at 479.747 kb on - strand, within AZOBR_RS02320 at 479.812 kb on + strand, within AZOBR_RS02320 at 479.813 kb on - strand, within AZOBR_RS02320 at 479.935 kb on + strand at 479.936 kb on - strand at 480.242 kb on + strand, within AZOBR_RS02325 at 480.242 kb on + strand, within AZOBR_RS02325 at 480.242 kb on + strand, within AZOBR_RS02325 at 480.242 kb on + strand, within AZOBR_RS02325 at 480.243 kb on - strand, within AZOBR_RS02325 at 480.243 kb on - strand, within AZOBR_RS02325 at 480.254 kb on + strand, within AZOBR_RS02325 at 480.254 kb on + strand, within AZOBR_RS02325 at 480.341 kb on + strand, within AZOBR_RS02325 at 480.341 kb on + strand, within AZOBR_RS02325 at 480.341 kb on + strand, within AZOBR_RS02325 at 480.342 kb on - strand, within AZOBR_RS02325 at 480.461 kb on + strand, within AZOBR_RS02325 at 480.462 kb on - strand, within AZOBR_RS02325 at 480.462 kb on - strand, within AZOBR_RS02325 at 480.686 kb on + strand, within AZOBR_RS02325 at 480.686 kb on + strand, within AZOBR_RS02325 at 480.686 kb on + strand, within AZOBR_RS02325 at 480.803 kb on + strand, within AZOBR_RS02325 at 480.804 kb on - strand, within AZOBR_RS02325 at 480.804 kb on - strand, within AZOBR_RS02325
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 479,083 - +0.7 479,254 + -0.6 479,254 + -0.3 479,255 - -0.0 479,488 + AZOBR_RS02320 0.37 +0.7 479,488 + AZOBR_RS02320 0.37 -0.2 479,488 + AZOBR_RS02320 0.37 +0.4 479,488 + AZOBR_RS02320 0.37 -0.5 479,489 - AZOBR_RS02320 0.37 -0.2 479,489 - AZOBR_RS02320 0.37 +0.6 479,489 - AZOBR_RS02320 0.37 -0.3 479,578 + AZOBR_RS02320 0.49 +0.9 479,579 - AZOBR_RS02320 0.49 -2.3 479,587 + AZOBR_RS02320 0.50 +2.6 479,746 + AZOBR_RS02320 0.71 +0.2 479,746 + AZOBR_RS02320 0.71 +0.3 479,746 + AZOBR_RS02320 0.71 -0.5 479,747 - AZOBR_RS02320 0.71 +0.6 479,747 - AZOBR_RS02320 0.71 -0.4 479,747 - AZOBR_RS02320 0.71 +0.1 479,812 + AZOBR_RS02320 0.80 +0.7 479,813 - AZOBR_RS02320 0.80 +0.7 479,935 + -1.3 479,936 - -1.5 480,242 + AZOBR_RS02325 0.13 -0.3 480,242 + AZOBR_RS02325 0.13 -0.1 480,242 + AZOBR_RS02325 0.13 +0.6 480,242 + AZOBR_RS02325 0.13 +1.0 480,243 - AZOBR_RS02325 0.13 -2.8 480,243 - AZOBR_RS02325 0.13 +0.1 480,254 + AZOBR_RS02325 0.13 -0.5 480,254 + AZOBR_RS02325 0.13 -1.3 480,341 + AZOBR_RS02325 0.19 -0.8 480,341 + AZOBR_RS02325 0.19 +0.1 480,341 + AZOBR_RS02325 0.19 -0.6 480,342 - AZOBR_RS02325 0.19 +0.1 480,461 + AZOBR_RS02325 0.27 +0.5 480,462 - AZOBR_RS02325 0.27 +0.2 480,462 - AZOBR_RS02325 0.27 +2.1 480,686 + AZOBR_RS02325 0.42 +0.4 480,686 + AZOBR_RS02325 0.42 +0.2 480,686 + AZOBR_RS02325 0.42 +1.0 480,803 + AZOBR_RS02325 0.50 +1.0 480,804 - AZOBR_RS02325 0.50 +0.3 480,804 - AZOBR_RS02325 0.50 +0.6
Or see this region's nucleotide sequence