Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01180 and AZOBR_RS01185 are separated by 246 nucleotides AZOBR_RS01185 and AZOBR_RS01190 are separated by 116 nucleotides
AZOBR_RS01180: AZOBR_RS01180 - peptidase S41, at 242,376 to 243,872
_RS01180
AZOBR_RS01185: AZOBR_RS01185 - hypothetical protein, at 244,119 to 244,649
_RS01185
AZOBR_RS01190: AZOBR_RS01190 - SAM-dependent methyltransferase, at 244,766 to 245,974
_RS01190
Position (kb) 244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.151 kb on + strand at 243.155 kb on - strand, within AZOBR_RS01180 at 243.155 kb on - strand, within AZOBR_RS01180 at 243.355 kb on + strand at 243.490 kb on + strand at 243.805 kb on + strand at 243.938 kb on - strand at 243.941 kb on + strand at 243.969 kb on + strand at 243.970 kb on - strand at 243.970 kb on - strand at 243.970 kb on - strand at 243.970 kb on - strand at 243.984 kb on - strand at 244.055 kb on - strand at 244.241 kb on + strand, within AZOBR_RS01185 at 244.326 kb on + strand, within AZOBR_RS01185 at 244.326 kb on + strand, within AZOBR_RS01185 at 244.326 kb on + strand, within AZOBR_RS01185 at 244.327 kb on - strand, within AZOBR_RS01185 at 244.647 kb on + strand at 244.647 kb on + strand at 244.648 kb on - strand at 244.648 kb on - strand at 244.796 kb on + strand at 244.797 kb on - strand at 244.860 kb on - strand at 244.860 kb on - strand at 245.090 kb on + strand, within AZOBR_RS01190 at 245.091 kb on - strand, within AZOBR_RS01190 at 245.402 kb on + strand, within AZOBR_RS01190 at 245.403 kb on - strand, within AZOBR_RS01190 at 245.403 kb on - strand, within AZOBR_RS01190 at 245.474 kb on + strand, within AZOBR_RS01190 at 245.474 kb on + strand, within AZOBR_RS01190 at 245.474 kb on + strand, within AZOBR_RS01190 at 245.475 kb on - strand, within AZOBR_RS01190 at 245.475 kb on - strand, within AZOBR_RS01190
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 243,151 + -0.5 243,155 - AZOBR_RS01180 0.52 -0.3 243,155 - AZOBR_RS01180 0.52 +2.6 243,355 + +2.6 243,490 + +2.6 243,805 + +0.1 243,938 - +2.6 243,941 + +2.6 243,969 + +0.9 243,970 - +2.6 243,970 - +0.2 243,970 - +0.3 243,970 - -1.1 243,984 - +0.1 244,055 - +0.2 244,241 + AZOBR_RS01185 0.23 -0.9 244,326 + AZOBR_RS01185 0.39 -0.4 244,326 + AZOBR_RS01185 0.39 -1.6 244,326 + AZOBR_RS01185 0.39 -1.4 244,327 - AZOBR_RS01185 0.39 -0.1 244,647 + +1.6 244,647 + +0.1 244,648 - -0.7 244,648 - -1.8 244,796 + +0.2 244,797 - -0.8 244,860 - -0.6 244,860 - -1.1 245,090 + AZOBR_RS01190 0.27 -0.3 245,091 - AZOBR_RS01190 0.27 +0.6 245,402 + AZOBR_RS01190 0.53 -0.4 245,403 - AZOBR_RS01190 0.53 +0.5 245,403 - AZOBR_RS01190 0.53 -0.7 245,474 + AZOBR_RS01190 0.59 -1.3 245,474 + AZOBR_RS01190 0.59 +0.3 245,474 + AZOBR_RS01190 0.59 +0.1 245,475 - AZOBR_RS01190 0.59 +0.2 245,475 - AZOBR_RS01190 0.59 -2.7
Or see this region's nucleotide sequence