Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00565 and AZOBR_RS00570 are separated by 223 nucleotides AZOBR_RS00570 and AZOBR_RS00575 are separated by 61 nucleotides AZOBR_RS00575 and AZOBR_RS00580 overlap by 4 nucleotides
AZOBR_RS00565: AZOBR_RS00565 - ferredoxin--NADP reductase, at 113,059 to 114,081
_RS00565
AZOBR_RS00570: AZOBR_RS00570 - hypothetical protein, at 114,305 to 114,736
_RS00570
AZOBR_RS00575: AZOBR_RS00575 - ATPase, at 114,798 to 115,256
_RS00575
AZOBR_RS00580: AZOBR_RS00580 - aminoglycoside phosphotransferase, at 115,253 to 116,266
_RS00580
Position (kb) 114
115
116 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 114.419 kb on + strand, within AZOBR_RS00570 at 114.539 kb on + strand, within AZOBR_RS00570 at 114.539 kb on + strand, within AZOBR_RS00570 at 115.302 kb on + strand at 115.353 kb on - strand at 115.583 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand at 115.832 kb on + strand, within AZOBR_RS00580 at 115.832 kb on + strand, within AZOBR_RS00580 at 115.833 kb on - strand, within AZOBR_RS00580 at 115.833 kb on - strand, within AZOBR_RS00580 at 116.049 kb on - strand, within AZOBR_RS00580 at 116.127 kb on - strand, within AZOBR_RS00580 at 116.127 kb on - strand, within AZOBR_RS00580
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 114,419 + AZOBR_RS00570 0.26 +0.9 114,539 + AZOBR_RS00570 0.54 -0.6 114,539 + AZOBR_RS00570 0.54 +2.1 115,302 + +1.0 115,353 - +0.9 115,583 + AZOBR_RS00580 0.33 -2.8 115,712 + AZOBR_RS00580 0.45 -0.6 115,712 + AZOBR_RS00580 0.45 -0.5 115,712 + AZOBR_RS00580 0.45 -0.0 115,712 + AZOBR_RS00580 0.45 +0.6 115,712 + AZOBR_RS00580 0.45 -1.5 115,713 - AZOBR_RS00580 0.45 +0.0 115,713 - AZOBR_RS00580 0.45 -1.8 115,713 - AZOBR_RS00580 0.45 -0.4 115,713 - AZOBR_RS00580 0.45 +0.3 115,713 - AZOBR_RS00580 0.45 +0.5 115,713 - AZOBR_RS00580 0.45 +0.1 115,713 - -0.0 115,832 + AZOBR_RS00580 0.57 -0.0 115,832 + AZOBR_RS00580 0.57 -2.0 115,833 - AZOBR_RS00580 0.57 -0.0 115,833 - AZOBR_RS00580 0.57 -2.2 116,049 - AZOBR_RS00580 0.79 -0.0 116,127 - AZOBR_RS00580 0.86 -0.1 116,127 - AZOBR_RS00580 0.86 +2.5
Or see this region's nucleotide sequence