Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2602

Experiment: 1 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2601 and DvMF_2602 overlap by 4 nucleotidesDvMF_2602 and DvMF_2603 are separated by 510 nucleotides DvMF_2601: DvMF_2601 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,286,232 to 3,287,632 _2601 DvMF_2602: DvMF_2602 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 3,287,629 to 3,290,469 _2602 DvMF_2603: DvMF_2603 - hypothetical protein (RefSeq), at 3,290,980 to 3,292,089 _2603 Position (kb) 3287 3288 3289 3290 3291Strain fitness (log2 ratio) -1 0 1 2at 3286.630 kb on - strand, within DvMF_2601at 3286.656 kb on - strand, within DvMF_2601at 3286.897 kb on + strand, within DvMF_2601at 3286.965 kb on + strand, within DvMF_2601at 3286.973 kb on - strand, within DvMF_2601at 3286.973 kb on - strand, within DvMF_2601at 3286.973 kb on - strand, within DvMF_2601at 3287.121 kb on + strand, within DvMF_2601at 3287.129 kb on - strand, within DvMF_2601at 3287.129 kb on - strand, within DvMF_2601at 3287.254 kb on - strand, within DvMF_2601at 3287.290 kb on + strand, within DvMF_2601at 3287.484 kb on + strand, within DvMF_2601at 3287.506 kb on - strandat 3287.636 kb on - strandat 3287.643 kb on - strandat 3287.694 kb on + strandat 3287.985 kb on + strand, within DvMF_2602at 3288.087 kb on + strand, within DvMF_2602at 3288.587 kb on + strand, within DvMF_2602at 3288.627 kb on - strand, within DvMF_2602at 3288.670 kb on + strand, within DvMF_2602at 3288.989 kb on - strand, within DvMF_2602at 3289.012 kb on + strand, within DvMF_2602at 3289.250 kb on + strand, within DvMF_2602at 3289.386 kb on - strand, within DvMF_2602at 3289.538 kb on - strand, within DvMF_2602at 3289.746 kb on - strand, within DvMF_2602at 3289.751 kb on - strand, within DvMF_2602at 3290.039 kb on - strand, within DvMF_2602at 3290.252 kb on + strandat 3290.290 kb on + strandat 3290.298 kb on - strandat 3290.325 kb on - strandat 3290.437 kb on + strandat 3290.593 kb on - strandat 3290.616 kb on - strandat 3290.786 kb on - strandat 3290.855 kb on + strandat 3290.863 kb on - strandat 3291.119 kb on - strand, within DvMF_2603

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Per-strain Table

Position Strand Gene LocusTag Fraction 1 day starvation, 37C
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3,286,630 - DvMF_2601 0.28 +0.5
3,286,656 - DvMF_2601 0.30 +0.4
3,286,897 + DvMF_2601 0.47 +0.5
3,286,965 + DvMF_2601 0.52 +0.6
3,286,973 - DvMF_2601 0.53 +0.4
3,286,973 - DvMF_2601 0.53 +0.5
3,286,973 - DvMF_2601 0.53 +0.2
3,287,121 + DvMF_2601 0.63 +0.6
3,287,129 - DvMF_2601 0.64 +0.9
3,287,129 - DvMF_2601 0.64 -0.1
3,287,254 - DvMF_2601 0.73 +0.6
3,287,290 + DvMF_2601 0.76 +0.0
3,287,484 + DvMF_2601 0.89 +1.3
3,287,506 - -0.2
3,287,636 - +0.6
3,287,643 - +0.6
3,287,694 + +0.4
3,287,985 + DvMF_2602 0.13 +0.3
3,288,087 + DvMF_2602 0.16 -0.2
3,288,587 + DvMF_2602 0.34 +0.1
3,288,627 - DvMF_2602 0.35 +0.3
3,288,670 + DvMF_2602 0.37 +0.4
3,288,989 - DvMF_2602 0.48 -0.6
3,289,012 + DvMF_2602 0.49 +0.6
3,289,250 + DvMF_2602 0.57 +0.4
3,289,386 - DvMF_2602 0.62 -0.1
3,289,538 - DvMF_2602 0.67 +0.1
3,289,746 - DvMF_2602 0.75 -1.7
3,289,751 - DvMF_2602 0.75 +0.1
3,290,039 - DvMF_2602 0.85 +0.7
3,290,252 + -1.2
3,290,290 + -0.2
3,290,298 - -0.4
3,290,325 - +0.4
3,290,437 + -0.1
3,290,593 - +2.1
3,290,616 - -0.4
3,290,786 - +0.0
3,290,855 + -0.5
3,290,863 - -0.3
3,291,119 - DvMF_2603 0.13 +0.8

Or see this region's nucleotide sequence