Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0300

Experiment: 1 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0299 and DvMF_0300 are separated by 117 nucleotidesDvMF_0300 and DvMF_0301 are separated by 144 nucleotides DvMF_0299: DvMF_0299 - glycosyl transferase family 9 (RefSeq), at 344,389 to 345,780 _0299 DvMF_0300: DvMF_0300 - CgeB family protein (RefSeq), at 345,898 to 347,244 _0300 DvMF_0301: DvMF_0301 - extracellular solute-binding protein family 3 (RefSeq), at 347,389 to 348,255 _0301 Position (kb) 345 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2at 344.934 kb on + strand, within DvMF_0299at 344.942 kb on - strand, within DvMF_0299at 344.984 kb on - strand, within DvMF_0299at 345.014 kb on + strand, within DvMF_0299at 345.027 kb on - strand, within DvMF_0299at 345.032 kb on - strand, within DvMF_0299at 345.044 kb on + strand, within DvMF_0299at 345.085 kb on + strand, within DvMF_0299at 345.094 kb on + strand, within DvMF_0299at 345.157 kb on + strand, within DvMF_0299at 345.165 kb on - strand, within DvMF_0299at 345.165 kb on - strand, within DvMF_0299at 345.165 kb on - strand, within DvMF_0299at 345.267 kb on - strand, within DvMF_0299at 345.363 kb on - strand, within DvMF_0299at 345.391 kb on + strand, within DvMF_0299at 345.399 kb on - strand, within DvMF_0299at 345.410 kb on + strand, within DvMF_0299at 345.418 kb on - strand, within DvMF_0299at 345.423 kb on + strand, within DvMF_0299at 345.431 kb on - strand, within DvMF_0299at 345.571 kb on - strand, within DvMF_0299at 345.602 kb on + strand, within DvMF_0299at 345.604 kb on + strand, within DvMF_0299at 345.625 kb on + strand, within DvMF_0299at 345.642 kb on + strandat 345.678 kb on - strandat 345.882 kb on + strandat 345.998 kb on + strandat 346.006 kb on + strandat 346.052 kb on - strand, within DvMF_0300at 346.140 kb on + strand, within DvMF_0300at 346.209 kb on - strand, within DvMF_0300at 346.209 kb on - strand, within DvMF_0300at 346.234 kb on + strand, within DvMF_0300at 346.234 kb on - strand, within DvMF_0300at 346.309 kb on + strand, within DvMF_0300at 346.336 kb on - strand, within DvMF_0300at 346.336 kb on - strand, within DvMF_0300at 346.337 kb on - strand, within DvMF_0300at 346.394 kb on - strand, within DvMF_0300at 346.439 kb on + strand, within DvMF_0300at 346.443 kb on + strand, within DvMF_0300at 346.443 kb on + strand, within DvMF_0300at 346.449 kb on + strand, within DvMF_0300at 346.451 kb on - strand, within DvMF_0300at 346.540 kb on - strand, within DvMF_0300at 346.590 kb on - strand, within DvMF_0300at 346.617 kb on - strand, within DvMF_0300at 346.645 kb on + strand, within DvMF_0300at 346.786 kb on - strand, within DvMF_0300at 346.905 kb on + strand, within DvMF_0300at 347.107 kb on + strand, within DvMF_0300at 347.179 kb on + strandat 347.350 kb on + strandat 347.407 kb on - strandat 347.461 kb on - strandat 347.490 kb on - strand, within DvMF_0301at 347.497 kb on + strand, within DvMF_0301at 347.627 kb on + strand, within DvMF_0301at 347.668 kb on - strand, within DvMF_0301at 347.787 kb on - strand, within DvMF_0301at 347.823 kb on + strand, within DvMF_0301at 347.835 kb on + strand, within DvMF_0301at 347.842 kb on + strand, within DvMF_0301at 347.847 kb on + strand, within DvMF_0301at 347.855 kb on - strand, within DvMF_0301at 347.855 kb on - strand, within DvMF_0301at 347.855 kb on - strand, within DvMF_0301at 347.958 kb on + strand, within DvMF_0301at 347.966 kb on - strand, within DvMF_0301at 348.027 kb on + strand, within DvMF_0301at 348.046 kb on + strand, within DvMF_0301at 348.085 kb on + strand, within DvMF_0301at 348.093 kb on - strand, within DvMF_0301at 348.093 kb on - strand, within DvMF_0301at 348.119 kb on - strand, within DvMF_0301

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Per-strain Table

Position Strand Gene LocusTag Fraction 1 day starvation, 37C
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344,934 + DvMF_0299 0.39 -0.4
344,942 - DvMF_0299 0.40 -0.9
344,984 - DvMF_0299 0.43 -1.3
345,014 + DvMF_0299 0.45 -0.7
345,027 - DvMF_0299 0.46 -0.7
345,032 - DvMF_0299 0.46 -1.7
345,044 + DvMF_0299 0.47 -1.2
345,085 + DvMF_0299 0.50 -0.9
345,094 + DvMF_0299 0.51 -0.7
345,157 + DvMF_0299 0.55 -0.4
345,165 - DvMF_0299 0.56 -1.2
345,165 - DvMF_0299 0.56 -0.5
345,165 - DvMF_0299 0.56 -0.8
345,267 - DvMF_0299 0.63 -0.9
345,363 - DvMF_0299 0.70 -0.9
345,391 + DvMF_0299 0.72 -1.6
345,399 - DvMF_0299 0.73 -0.8
345,410 + DvMF_0299 0.73 -0.4
345,418 - DvMF_0299 0.74 -0.4
345,423 + DvMF_0299 0.74 -0.8
345,431 - DvMF_0299 0.75 +0.9
345,571 - DvMF_0299 0.85 -0.1
345,602 + DvMF_0299 0.87 +0.1
345,604 + DvMF_0299 0.87 -0.6
345,625 + DvMF_0299 0.89 -1.4
345,642 + -0.9
345,678 - -1.1
345,882 + +1.3
345,998 + -0.7
346,006 + -0.4
346,052 - DvMF_0300 0.11 -1.5
346,140 + DvMF_0300 0.18 +1.0
346,209 - DvMF_0300 0.23 +0.7
346,209 - DvMF_0300 0.23 -0.8
346,234 + DvMF_0300 0.25 -0.4
346,234 - DvMF_0300 0.25 +0.3
346,309 + DvMF_0300 0.31 -0.6
346,336 - DvMF_0300 0.33 +0.0
346,336 - DvMF_0300 0.33 -0.5
346,337 - DvMF_0300 0.33 +0.0
346,394 - DvMF_0300 0.37 -0.6
346,439 + DvMF_0300 0.40 -1.8
346,443 + DvMF_0300 0.40 -0.1
346,443 + DvMF_0300 0.40 +1.8
346,449 + DvMF_0300 0.41 -1.0
346,451 - DvMF_0300 0.41 -0.5
346,540 - DvMF_0300 0.48 +0.0
346,590 - DvMF_0300 0.51 -0.9
346,617 - DvMF_0300 0.53 -0.5
346,645 + DvMF_0300 0.55 -2.6
346,786 - DvMF_0300 0.66 -1.4
346,905 + DvMF_0300 0.75 -0.8
347,107 + DvMF_0300 0.90 -0.6
347,179 + -0.4
347,350 + +0.4
347,407 - +0.3
347,461 - -1.0
347,490 - DvMF_0301 0.12 +0.3
347,497 + DvMF_0301 0.12 +0.5
347,627 + DvMF_0301 0.27 +0.6
347,668 - DvMF_0301 0.32 +0.7
347,787 - DvMF_0301 0.46 +0.8
347,823 + DvMF_0301 0.50 +0.4
347,835 + DvMF_0301 0.51 +0.1
347,842 + DvMF_0301 0.52 +0.4
347,847 + DvMF_0301 0.53 +0.3
347,855 - DvMF_0301 0.54 +0.2
347,855 - DvMF_0301 0.54 +0.3
347,855 - DvMF_0301 0.54 +0.6
347,958 + DvMF_0301 0.66 +0.0
347,966 - DvMF_0301 0.67 +0.7
348,027 + DvMF_0301 0.74 +0.5
348,046 + DvMF_0301 0.76 +0.2
348,085 + DvMF_0301 0.80 +0.3
348,093 - DvMF_0301 0.81 +0.4
348,093 - DvMF_0301 0.81 +0.6
348,119 - DvMF_0301 0.84 +0.0

Or see this region's nucleotide sequence