Strain Fitness in Marinobacter adhaerens HP15 around HP15_99

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_98 and HP15_99 are separated by 367 nucleotidesHP15_99 and HP15_100 overlap by 4 nucleotides HP15_98: HP15_98 - secreted protein with internal repeats-like protein, at 100,830 to 101,192 _98 HP15_99: HP15_99 - hypothetical protein, at 101,560 to 102,087 _99 HP15_100: HP15_100 - saccharopine dehydrogenase, at 102,084 to 103,295 _100 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 100.637 kb on - strandat 100.653 kb on + strandat 100.653 kb on + strandat 100.749 kb on - strandat 100.798 kb on + strandat 100.863 kb on + strandat 100.863 kb on + strandat 100.873 kb on + strand, within HP15_98at 100.873 kb on + strand, within HP15_98at 100.906 kb on - strand, within HP15_98at 100.997 kb on + strand, within HP15_98at 101.007 kb on + strand, within HP15_98at 101.007 kb on + strand, within HP15_98at 101.130 kb on + strand, within HP15_98at 101.199 kb on - strandat 101.259 kb on - strandat 101.281 kb on - strandat 101.352 kb on - strandat 101.364 kb on + strandat 101.481 kb on - strandat 101.504 kb on + strandat 101.517 kb on - strandat 101.565 kb on - strandat 101.581 kb on - strandat 101.665 kb on + strand, within HP15_99at 101.732 kb on - strand, within HP15_99at 101.747 kb on - strand, within HP15_99at 101.782 kb on + strand, within HP15_99at 101.862 kb on - strand, within HP15_99at 101.914 kb on + strand, within HP15_99at 101.918 kb on - strand, within HP15_99at 101.946 kb on + strand, within HP15_99at 101.946 kb on + strand, within HP15_99at 101.983 kb on + strand, within HP15_99at 101.983 kb on + strand, within HP15_99at 101.983 kb on + strand, within HP15_99at 101.991 kb on - strand, within HP15_99at 101.991 kb on - strand, within HP15_99at 101.991 kb on - strand, within HP15_99at 102.039 kb on - strandat 102.047 kb on - strandat 102.047 kb on - strandat 102.057 kb on - strandat 102.062 kb on + strandat 102.082 kb on + strandat 102.132 kb on + strandat 102.183 kb on - strandat 102.249 kb on + strand, within HP15_100at 102.289 kb on + strand, within HP15_100at 102.294 kb on + strand, within HP15_100at 102.302 kb on - strand, within HP15_100at 102.316 kb on - strand, within HP15_100at 102.340 kb on + strand, within HP15_100at 102.340 kb on + strand, within HP15_100at 102.348 kb on - strand, within HP15_100at 102.368 kb on - strand, within HP15_100at 102.418 kb on + strand, within HP15_100at 102.418 kb on + strand, within HP15_100at 102.426 kb on - strand, within HP15_100at 102.426 kb on - strand, within HP15_100at 102.441 kb on - strand, within HP15_100at 102.441 kb on - strand, within HP15_100at 102.515 kb on - strand, within HP15_100at 102.515 kb on - strand, within HP15_100at 102.540 kb on - strand, within HP15_100at 102.563 kb on + strand, within HP15_100at 102.573 kb on + strand, within HP15_100at 102.629 kb on + strand, within HP15_100at 102.662 kb on + strand, within HP15_100at 102.670 kb on - strand, within HP15_100at 102.765 kb on + strand, within HP15_100at 102.773 kb on - strand, within HP15_100at 102.799 kb on + strand, within HP15_100at 102.827 kb on - strand, within HP15_100at 102.946 kb on + strand, within HP15_100at 102.975 kb on - strand, within HP15_100at 103.034 kb on - strand, within HP15_100

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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100,637 - -0.0
100,653 + +0.2
100,653 + +0.0
100,749 - +2.2
100,798 + -2.2
100,863 + +0.2
100,863 + +0.5
100,873 + HP15_98 0.12 +0.2
100,873 + HP15_98 0.12 +0.5
100,906 - HP15_98 0.21 -0.4
100,997 + HP15_98 0.46 -0.2
101,007 + HP15_98 0.49 -0.0
101,007 + HP15_98 0.49 -0.2
101,130 + HP15_98 0.83 -0.5
101,199 - +0.3
101,259 - +0.2
101,281 - -1.6
101,352 - -1.2
101,364 + +1.6
101,481 - -0.7
101,504 + +0.8
101,517 - +0.0
101,565 - -0.4
101,581 - -0.6
101,665 + HP15_99 0.20 +0.6
101,732 - HP15_99 0.33 +0.1
101,747 - HP15_99 0.35 -1.1
101,782 + HP15_99 0.42 -0.1
101,862 - HP15_99 0.57 -0.1
101,914 + HP15_99 0.67 -0.7
101,918 - HP15_99 0.68 -0.7
101,946 + HP15_99 0.73 +0.2
101,946 + HP15_99 0.73 +0.1
101,983 + HP15_99 0.80 -0.5
101,983 + HP15_99 0.80 -0.3
101,983 + HP15_99 0.80 -1.0
101,991 - HP15_99 0.82 -0.4
101,991 - HP15_99 0.82 -0.1
101,991 - HP15_99 0.82 -0.3
102,039 - +0.8
102,047 - -2.2
102,047 - +0.0
102,057 - +0.6
102,062 + +0.0
102,082 + -1.2
102,132 + -0.6
102,183 - -0.1
102,249 + HP15_100 0.14 +0.5
102,289 + HP15_100 0.17 +0.1
102,294 + HP15_100 0.17 -1.2
102,302 - HP15_100 0.18 -0.8
102,316 - HP15_100 0.19 -0.2
102,340 + HP15_100 0.21 -0.6
102,340 + HP15_100 0.21 +0.3
102,348 - HP15_100 0.22 -0.8
102,368 - HP15_100 0.23 -0.1
102,418 + HP15_100 0.28 -0.4
102,418 + HP15_100 0.28 +0.4
102,426 - HP15_100 0.28 +0.2
102,426 - HP15_100 0.28 -0.6
102,441 - HP15_100 0.29 +0.2
102,441 - HP15_100 0.29 +0.9
102,515 - HP15_100 0.36 -0.2
102,515 - HP15_100 0.36 +0.5
102,540 - HP15_100 0.38 -0.6
102,563 + HP15_100 0.40 -0.5
102,573 + HP15_100 0.40 +0.4
102,629 + HP15_100 0.45 -0.5
102,662 + HP15_100 0.48 -0.3
102,670 - HP15_100 0.48 -0.2
102,765 + HP15_100 0.56 +0.2
102,773 - HP15_100 0.57 +0.2
102,799 + HP15_100 0.59 -0.9
102,827 - HP15_100 0.61 +0.7
102,946 + HP15_100 0.71 +0.2
102,975 - HP15_100 0.74 +0.1
103,034 - HP15_100 0.78 +0.1

Or see this region's nucleotide sequence