Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08820

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08800 and PGA1_c08810 are separated by 219 nucleotidesPGA1_c08810 and PGA1_c08820 are separated by 107 nucleotidesPGA1_c08820 and PGA1_c08830 are separated by 254 nucleotidesPGA1_c08830 and PGA1_c08840 are separated by 33 nucleotides PGA1_c08800: PGA1_c08800 - RNA polymerase sigma factor RpoD, at 909,600 to 911,588 _c08800 PGA1_c08810: PGA1_c08810 - hypothetical protein, at 911,808 to 912,107 _c08810 PGA1_c08820: PGA1_c08820 - putative oxidoreductase, at 912,215 to 912,889 _c08820 PGA1_c08830: PGA1_c08830 - hypothetical protein, at 913,144 to 913,554 _c08830 PGA1_c08840: PGA1_c08840 - hypothetical protein, at 913,588 to 914,079 _c08840 Position (kb) 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 911.575 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.656 kb on + strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.664 kb on - strandat 911.707 kb on - strandat 911.717 kb on - strandat 911.725 kb on - strandat 911.760 kb on + strandat 911.875 kb on - strand, within PGA1_c08810at 911.882 kb on - strand, within PGA1_c08810at 911.887 kb on - strand, within PGA1_c08810at 911.887 kb on - strand, within PGA1_c08810at 911.887 kb on - strand, within PGA1_c08810at 911.934 kb on + strand, within PGA1_c08810at 911.973 kb on + strand, within PGA1_c08810at 912.003 kb on - strand, within PGA1_c08810at 912.048 kb on + strand, within PGA1_c08810at 912.075 kb on + strand, within PGA1_c08810at 912.083 kb on + strandat 912.101 kb on + strandat 912.128 kb on - strandat 912.168 kb on - strandat 912.172 kb on + strandat 912.218 kb on + strandat 912.389 kb on - strand, within PGA1_c08820at 912.496 kb on - strand, within PGA1_c08820at 912.505 kb on - strand, within PGA1_c08820at 912.528 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.620 kb on + strand, within PGA1_c08820at 912.628 kb on - strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.738 kb on - strand, within PGA1_c08820at 912.757 kb on + strand, within PGA1_c08820at 912.823 kb on - strandat 912.823 kb on - strandat 912.849 kb on - strandat 912.940 kb on - strandat 912.963 kb on + strandat 912.968 kb on + strandat 912.987 kb on + strandat 913.046 kb on + strandat 913.046 kb on - strandat 913.066 kb on - strandat 913.088 kb on + strandat 913.090 kb on + strandat 913.110 kb on - strandat 913.138 kb on + strandat 913.146 kb on - strandat 913.160 kb on - strandat 913.191 kb on - strand, within PGA1_c08830at 913.191 kb on - strand, within PGA1_c08830at 913.191 kb on - strand, within PGA1_c08830at 913.193 kb on + strand, within PGA1_c08830at 913.251 kb on + strand, within PGA1_c08830at 913.383 kb on + strand, within PGA1_c08830at 913.383 kb on + strand, within PGA1_c08830at 913.391 kb on + strand, within PGA1_c08830at 913.391 kb on - strand, within PGA1_c08830at 913.392 kb on - strand, within PGA1_c08830at 913.427 kb on + strand, within PGA1_c08830at 913.471 kb on - strand, within PGA1_c08830at 913.500 kb on + strand, within PGA1_c08830at 913.513 kb on - strand, within PGA1_c08830at 913.545 kb on - strandat 913.627 kb on + strandat 913.627 kb on + strandat 913.635 kb on - strandat 913.650 kb on - strand, within PGA1_c08840at 913.707 kb on + strand, within PGA1_c08840at 913.715 kb on - strand, within PGA1_c08840at 913.725 kb on - strand, within PGA1_c08840at 913.780 kb on - strand, within PGA1_c08840at 913.855 kb on - strand, within PGA1_c08840at 913.865 kb on - strand, within PGA1_c08840at 913.880 kb on - strand, within PGA1_c08840at 913.880 kb on - strand, within PGA1_c08840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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911,575 + +3.2
911,656 + -0.3
911,656 + -0.6
911,656 + -0.4
911,656 + +0.3
911,656 + +0.9
911,656 + +0.7
911,656 + +0.7
911,656 + +0.1
911,656 + +0.6
911,656 + +0.4
911,664 - +0.1
911,664 - -0.3
911,664 - -1.0
911,664 - +0.6
911,664 - -0.0
911,664 - +0.3
911,664 - -0.5
911,707 - +1.3
911,717 - -0.0
911,725 - +0.2
911,760 + -0.6
911,875 - PGA1_c08810 0.22 +0.4
911,882 - PGA1_c08810 0.25 -1.4
911,887 - PGA1_c08810 0.26 +0.3
911,887 - PGA1_c08810 0.26 +0.7
911,887 - PGA1_c08810 0.26 +1.3
911,934 + PGA1_c08810 0.42 +1.0
911,973 + PGA1_c08810 0.55 +1.3
912,003 - PGA1_c08810 0.65 -1.4
912,048 + PGA1_c08810 0.80 -0.9
912,075 + PGA1_c08810 0.89 -0.6
912,083 + +0.8
912,101 + +0.3
912,128 - +0.2
912,168 - -0.3
912,172 + +0.6
912,218 + -0.3
912,389 - PGA1_c08820 0.26 +1.3
912,496 - PGA1_c08820 0.42 +0.6
912,505 - PGA1_c08820 0.43 +0.3
912,528 + PGA1_c08820 0.46 +1.7
912,543 + PGA1_c08820 0.49 +0.8
912,543 + PGA1_c08820 0.49 +1.3
912,543 + PGA1_c08820 0.49 +0.5
912,543 + PGA1_c08820 0.49 -0.7
912,551 - PGA1_c08820 0.50 -0.3
912,551 - PGA1_c08820 0.50 +0.0
912,551 - PGA1_c08820 0.50 +1.0
912,620 + PGA1_c08820 0.60 +1.0
912,628 - PGA1_c08820 0.61 +0.4
912,730 + PGA1_c08820 0.76 -0.4
912,730 + PGA1_c08820 0.76 +0.9
912,730 + PGA1_c08820 0.76 +0.9
912,738 - PGA1_c08820 0.77 +0.6
912,757 + PGA1_c08820 0.80 +0.2
912,823 - +1.2
912,823 - +1.2
912,849 - +0.5
912,940 - +1.3
912,963 + +1.2
912,968 + +1.5
912,987 + +3.8
913,046 + +0.7
913,046 - +0.8
913,066 - +0.2
913,088 + -0.0
913,090 + +1.2
913,110 - -1.7
913,138 + -1.3
913,146 - -0.7
913,160 - -0.2
913,191 - PGA1_c08830 0.11 -1.6
913,191 - PGA1_c08830 0.11 -2.9
913,191 - PGA1_c08830 0.11 -0.8
913,193 + PGA1_c08830 0.12 -0.5
913,251 + PGA1_c08830 0.26 -0.7
913,383 + PGA1_c08830 0.58 +0.2
913,383 + PGA1_c08830 0.58 -0.1
913,391 + PGA1_c08830 0.60 +0.8
913,391 - PGA1_c08830 0.60 +0.8
913,392 - PGA1_c08830 0.60 -1.0
913,427 + PGA1_c08830 0.69 -1.4
913,471 - PGA1_c08830 0.80 -1.9
913,500 + PGA1_c08830 0.87 -1.3
913,513 - PGA1_c08830 0.90 -1.3
913,545 - +1.6
913,627 + -1.5
913,627 + -0.6
913,635 - -1.2
913,650 - PGA1_c08840 0.13 -1.5
913,707 + PGA1_c08840 0.24 -0.1
913,715 - PGA1_c08840 0.26 -0.2
913,725 - PGA1_c08840 0.28 -0.8
913,780 - PGA1_c08840 0.39 -1.7
913,855 - PGA1_c08840 0.54 -0.3
913,865 - PGA1_c08840 0.56 -0.9
913,880 - PGA1_c08840 0.59 -0.5
913,880 - PGA1_c08840 0.59 -0.3

Or see this region's nucleotide sequence