Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08260

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08240 and PGA1_c08250 overlap by 8 nucleotidesPGA1_c08250 and PGA1_c08260 are separated by 93 nucleotidesPGA1_c08260 and PGA1_c08270 are separated by 3 nucleotides PGA1_c08240: PGA1_c08240 - aerobic glycerol-3-phosphate dehydrogenase GlpD, at 852,461 to 854,050 _c08240 PGA1_c08250: PGA1_c08250 - putative glycerol-3-phosphate regulon repressor glpR, at 854,043 to 854,828 _c08250 PGA1_c08260: PGA1_c08260 - Uncharacterized protein conserved in bacteria, at 854,922 to 856,016 _c08260 PGA1_c08270: PGA1_c08270 - Predicted periplasmic lipoprotein, at 856,020 to 857,144 _c08270 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2at 854.222 kb on - strand, within PGA1_c08250at 854.222 kb on - strand, within PGA1_c08250at 854.309 kb on - strand, within PGA1_c08250at 854.514 kb on - strand, within PGA1_c08250at 854.561 kb on - strand, within PGA1_c08250at 854.746 kb on - strand, within PGA1_c08250at 854.845 kb on + strandat 854.971 kb on + strandat 854.975 kb on - strandat 854.975 kb on - strandat 855.255 kb on - strand, within PGA1_c08260at 855.404 kb on + strand, within PGA1_c08260at 855.411 kb on - strand, within PGA1_c08260at 855.411 kb on - strand, within PGA1_c08260at 855.436 kb on - strand, within PGA1_c08260at 855.449 kb on - strand, within PGA1_c08260at 855.512 kb on + strand, within PGA1_c08260at 855.517 kb on + strand, within PGA1_c08260at 855.520 kb on - strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.708 kb on - strand, within PGA1_c08260at 855.708 kb on - strand, within PGA1_c08260at 855.720 kb on + strand, within PGA1_c08260at 855.728 kb on - strand, within PGA1_c08260at 855.728 kb on - strand, within PGA1_c08260at 855.870 kb on + strand, within PGA1_c08260at 855.870 kb on + strand, within PGA1_c08260at 855.870 kb on + strand, within PGA1_c08260at 855.967 kb on - strandat 856.037 kb on + strandat 856.105 kb on - strandat 856.105 kb on - strandat 856.222 kb on + strand, within PGA1_c08270at 856.222 kb on + strand, within PGA1_c08270at 856.253 kb on + strand, within PGA1_c08270at 856.261 kb on - strand, within PGA1_c08270at 856.335 kb on + strand, within PGA1_c08270at 856.348 kb on + strand, within PGA1_c08270at 856.358 kb on + strand, within PGA1_c08270at 856.358 kb on + strand, within PGA1_c08270at 856.366 kb on - strand, within PGA1_c08270at 856.394 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.474 kb on - strand, within PGA1_c08270at 856.474 kb on - strand, within PGA1_c08270at 856.476 kb on + strand, within PGA1_c08270at 856.479 kb on - strand, within PGA1_c08270at 856.508 kb on - strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.577 kb on - strand, within PGA1_c08270at 856.823 kb on + strand, within PGA1_c08270at 856.892 kb on + strand, within PGA1_c08270at 856.898 kb on + strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.913 kb on + strand, within PGA1_c08270at 856.921 kb on - strand, within PGA1_c08270at 856.983 kb on + strand, within PGA1_c08270at 856.983 kb on + strand, within PGA1_c08270at 856.991 kb on - strand, within PGA1_c08270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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854,222 - PGA1_c08250 0.23 +1.1
854,222 - PGA1_c08250 0.23 -1.0
854,309 - PGA1_c08250 0.34 -0.0
854,514 - PGA1_c08250 0.60 +1.9
854,561 - PGA1_c08250 0.66 +1.0
854,746 - PGA1_c08250 0.89 +0.3
854,845 + +0.6
854,971 + -1.9
854,975 - +0.1
854,975 - +0.4
855,255 - PGA1_c08260 0.30 -0.7
855,404 + PGA1_c08260 0.44 -1.4
855,411 - PGA1_c08260 0.45 -0.4
855,411 - PGA1_c08260 0.45 +0.3
855,436 - PGA1_c08260 0.47 +0.0
855,449 - PGA1_c08260 0.48 +0.2
855,512 + PGA1_c08260 0.54 -0.1
855,517 + PGA1_c08260 0.54 +0.6
855,520 - PGA1_c08260 0.55 -1.1
855,653 + PGA1_c08260 0.67 +0.8
855,653 + PGA1_c08260 0.67 +1.1
855,653 + PGA1_c08260 0.67 -0.1
855,653 + PGA1_c08260 0.67 -0.7
855,653 + PGA1_c08260 0.67 -0.3
855,653 + PGA1_c08260 0.67 +0.2
855,653 + PGA1_c08260 0.67 +0.0
855,653 + PGA1_c08260 0.67 -0.0
855,653 + PGA1_c08260 0.67 -0.8
855,661 - PGA1_c08260 0.67 -0.7
855,661 - PGA1_c08260 0.67 -0.7
855,661 - PGA1_c08260 0.67 +1.5
855,661 - PGA1_c08260 0.67 +0.1
855,661 - PGA1_c08260 0.67 +0.3
855,661 - PGA1_c08260 0.67 +0.1
855,708 - PGA1_c08260 0.72 +0.2
855,708 - PGA1_c08260 0.72 -0.8
855,720 + PGA1_c08260 0.73 +0.4
855,728 - PGA1_c08260 0.74 +0.8
855,728 - PGA1_c08260 0.74 +0.1
855,870 + PGA1_c08260 0.87 -0.1
855,870 + PGA1_c08260 0.87 -1.3
855,870 + PGA1_c08260 0.87 +0.3
855,967 - +0.4
856,037 + -0.6
856,105 - +0.4
856,105 - +0.0
856,222 + PGA1_c08270 0.18 -0.5
856,222 + PGA1_c08270 0.18 +0.6
856,253 + PGA1_c08270 0.21 +0.6
856,261 - PGA1_c08270 0.21 +0.5
856,335 + PGA1_c08270 0.28 -0.3
856,348 + PGA1_c08270 0.29 -0.9
856,358 + PGA1_c08270 0.30 -0.5
856,358 + PGA1_c08270 0.30 +0.4
856,366 - PGA1_c08270 0.31 -0.8
856,394 + PGA1_c08270 0.33 -0.4
856,466 + PGA1_c08270 0.40 -0.6
856,466 + PGA1_c08270 0.40 +0.3
856,466 + PGA1_c08270 0.40 -0.3
856,466 + PGA1_c08270 0.40 -1.7
856,474 - PGA1_c08270 0.40 +0.6
856,474 - PGA1_c08270 0.40 -0.1
856,476 + PGA1_c08270 0.41 -0.4
856,479 - PGA1_c08270 0.41 -0.6
856,508 - PGA1_c08270 0.43 -0.1
856,569 + PGA1_c08270 0.49 -0.7
856,569 + PGA1_c08270 0.49 +0.3
856,569 + PGA1_c08270 0.49 +0.4
856,577 - PGA1_c08270 0.50 +0.5
856,823 + PGA1_c08270 0.71 -1.7
856,892 + PGA1_c08270 0.78 -0.5
856,898 + PGA1_c08270 0.78 -0.3
856,911 - PGA1_c08270 0.79 +0.8
856,911 - PGA1_c08270 0.79 -1.5
856,911 - PGA1_c08270 0.79 +0.4
856,913 + PGA1_c08270 0.79 -1.4
856,921 - PGA1_c08270 0.80 -0.0
856,983 + PGA1_c08270 0.86 +0.8
856,983 + PGA1_c08270 0.86 +0.2
856,991 - PGA1_c08270 0.86 +0.3

Or see this region's nucleotide sequence