Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07940 and PGA1_c07950 are separated by 149 nucleotides PGA1_c07950 and PGA1_c07960 are separated by 1 nucleotides
PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033
_c07940
PGA1_c07950: PGA1_c07950 - hypothetical protein, at 825,183 to 825,677
_c07950
PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196
_c07960
Position (kb) 825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 824.190 kb on + strand, within PGA1_c07940 at 824.231 kb on - strand, within PGA1_c07940 at 824.281 kb on + strand, within PGA1_c07940 at 824.310 kb on + strand, within PGA1_c07940 at 824.350 kb on - strand, within PGA1_c07940 at 824.587 kb on + strand, within PGA1_c07940 at 824.613 kb on - strand, within PGA1_c07940 at 824.674 kb on + strand, within PGA1_c07940 at 824.751 kb on - strand, within PGA1_c07940 at 824.755 kb on + strand, within PGA1_c07940 at 824.760 kb on + strand, within PGA1_c07940 at 824.776 kb on + strand, within PGA1_c07940 at 824.937 kb on + strand at 824.952 kb on - strand at 825.034 kb on + strand at 825.050 kb on - strand at 825.334 kb on - strand, within PGA1_c07950 at 825.397 kb on - strand, within PGA1_c07950 at 825.443 kb on + strand, within PGA1_c07950 at 825.631 kb on + strand at 825.664 kb on + strand at 825.908 kb on + strand, within PGA1_c07960 at 825.916 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960 at 826.040 kb on + strand, within PGA1_c07960 at 826.057 kb on - strand, within PGA1_c07960 at 826.080 kb on + strand, within PGA1_c07960 at 826.098 kb on + strand, within PGA1_c07960 at 826.188 kb on + strand, within PGA1_c07960 at 826.218 kb on - strand, within PGA1_c07960 at 826.220 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.309 kb on - strand, within PGA1_c07960 at 826.309 kb on - strand, within PGA1_c07960 at 826.334 kb on - strand, within PGA1_c07960 at 826.407 kb on + strand, within PGA1_c07960 at 826.520 kb on + strand, within PGA1_c07960 at 826.525 kb on + strand, within PGA1_c07960 at 826.538 kb on - strand, within PGA1_c07960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 824,190 + PGA1_c07940 0.14 +0.9 824,231 - PGA1_c07940 0.18 +0.3 824,281 + PGA1_c07940 0.23 -0.5 824,310 + PGA1_c07940 0.26 +0.1 824,350 - PGA1_c07940 0.30 +0.1 824,587 + PGA1_c07940 0.54 -0.4 824,613 - PGA1_c07940 0.57 +0.4 824,674 + PGA1_c07940 0.63 +0.1 824,751 - PGA1_c07940 0.71 -0.7 824,755 + PGA1_c07940 0.71 -0.9 824,760 + PGA1_c07940 0.72 +0.6 824,776 + PGA1_c07940 0.74 +0.6 824,937 + +0.4 824,952 - -0.6 825,034 + -0.4 825,050 - -0.5 825,334 - PGA1_c07950 0.31 -0.8 825,397 - PGA1_c07950 0.43 -2.0 825,443 + PGA1_c07950 0.53 -0.3 825,631 + +0.3 825,664 + -1.0 825,908 + PGA1_c07960 0.15 +0.1 825,916 - PGA1_c07960 0.16 +0.6 825,992 - PGA1_c07960 0.21 -0.0 825,992 - PGA1_c07960 0.21 +1.1 826,040 + PGA1_c07960 0.24 -0.3 826,057 - PGA1_c07960 0.25 -0.5 826,080 + PGA1_c07960 0.26 +0.0 826,098 + PGA1_c07960 0.28 +2.1 826,188 + PGA1_c07960 0.34 +1.6 826,218 - PGA1_c07960 0.36 +0.2 826,220 + PGA1_c07960 0.36 -2.9 826,224 + PGA1_c07960 0.36 -0.6 826,224 + PGA1_c07960 0.36 +0.1 826,224 + PGA1_c07960 0.36 +0.4 826,224 + PGA1_c07960 0.36 -0.2 826,232 - PGA1_c07960 0.36 +0.2 826,232 - PGA1_c07960 0.36 +0.1 826,232 - PGA1_c07960 0.36 +1.0 826,232 - PGA1_c07960 0.36 +0.0 826,309 - PGA1_c07960 0.42 +0.3 826,309 - PGA1_c07960 0.42 -0.3 826,334 - PGA1_c07960 0.43 +0.4 826,407 + PGA1_c07960 0.48 +0.4 826,520 + PGA1_c07960 0.55 -0.7 826,525 + PGA1_c07960 0.56 -0.3 826,538 - PGA1_c07960 0.57 -0.8
Or see this region's nucleotide sequence