Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06510 and PGA1_c06520 are separated by 135 nucleotides PGA1_c06520 and PGA1_c06530 are separated by 148 nucleotides
PGA1_c06510: PGA1_c06510 - pyruvate, phosphate dikinase PpdK, at 667,531 to 670,131
_c06510
PGA1_c06520: PGA1_c06520 - cell wall hydrolase-like protein, at 670,267 to 670,950
_c06520
PGA1_c06530: PGA1_c06530 - dihydroneopterin aldolase-like protein, at 671,099 to 672,019
_c06530
Position (kb) 670
671 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 669.328 kb on - strand, within PGA1_c06510 at 669.370 kb on - strand, within PGA1_c06510 at 669.437 kb on - strand, within PGA1_c06510 at 669.446 kb on - strand, within PGA1_c06510 at 669.548 kb on + strand, within PGA1_c06510 at 669.548 kb on + strand, within PGA1_c06510 at 669.667 kb on + strand, within PGA1_c06510 at 669.787 kb on - strand, within PGA1_c06510 at 669.802 kb on - strand, within PGA1_c06510 at 669.852 kb on + strand, within PGA1_c06510 at 669.895 kb on - strand at 670.184 kb on - strand at 670.197 kb on + strand at 670.198 kb on - strand at 670.267 kb on - strand at 670.389 kb on + strand, within PGA1_c06520 at 670.389 kb on + strand, within PGA1_c06520 at 670.389 kb on + strand, within PGA1_c06520 at 670.389 kb on + strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.397 kb on - strand, within PGA1_c06520 at 670.473 kb on + strand, within PGA1_c06520 at 670.473 kb on - strand, within PGA1_c06520 at 670.481 kb on - strand, within PGA1_c06520 at 670.509 kb on + strand, within PGA1_c06520 at 670.579 kb on - strand, within PGA1_c06520 at 670.722 kb on - strand, within PGA1_c06520 at 670.906 kb on - strand at 670.906 kb on - strand at 670.926 kb on + strand at 670.944 kb on - strand at 671.011 kb on + strand at 671.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 669,328 - PGA1_c06510 0.69 -0.0 669,370 - PGA1_c06510 0.71 +0.2 669,437 - PGA1_c06510 0.73 -1.4 669,446 - PGA1_c06510 0.74 +0.7 669,548 + PGA1_c06510 0.78 -0.3 669,548 + PGA1_c06510 0.78 +1.1 669,667 + PGA1_c06510 0.82 +1.9 669,787 - PGA1_c06510 0.87 -0.1 669,802 - PGA1_c06510 0.87 +0.1 669,852 + PGA1_c06510 0.89 +0.6 669,895 - +0.1 670,184 - -2.0 670,197 + -1.0 670,198 - -1.6 670,267 - -3.8 670,389 + PGA1_c06520 0.18 -3.1 670,389 + PGA1_c06520 0.18 -0.7 670,389 + PGA1_c06520 0.18 -2.3 670,389 + PGA1_c06520 0.18 -1.9 670,397 - PGA1_c06520 0.19 -2.8 670,397 - PGA1_c06520 0.19 -1.1 670,397 - PGA1_c06520 0.19 -1.8 670,397 - PGA1_c06520 0.19 -1.8 670,473 + PGA1_c06520 0.30 -0.4 670,473 - PGA1_c06520 0.30 -3.1 670,481 - PGA1_c06520 0.31 -1.0 670,509 + PGA1_c06520 0.35 -0.3 670,579 - PGA1_c06520 0.46 -2.6 670,722 - PGA1_c06520 0.67 -3.4 670,906 - -2.2 670,906 - -3.5 670,926 + +0.6 670,944 - +0.2 671,011 + -0.2 671,055 + -1.2
Or see this region's nucleotide sequence