Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06420 and PGA1_c06430 are separated by 96 nucleotides PGA1_c06430 and PGA1_c06440 are separated by 121 nucleotides PGA1_c06440 and PGA1_c06450 are separated by 13 nucleotides PGA1_c06450 and PGA1_c06460 are separated by 118 nucleotides
PGA1_c06420: PGA1_c06420 - acetyltransferase domain-containing protein, at 657,419 to 657,928
_c06420
PGA1_c06430: PGA1_c06430 - hypothetical protein, at 658,025 to 658,804
_c06430
PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456
_c06440
PGA1_c06450: PGA1_c06450 - short-chain dehydrogenases/reductase domain-containing protein, at 659,470 to 660,111
_c06450
PGA1_c06460: PGA1_c06460 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 660,230 to 662,008
_c06460
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.052 kb on + strand at 658.052 kb on + strand at 658.057 kb on + strand at 658.060 kb on - strand at 658.065 kb on - strand at 658.065 kb on - strand at 658.065 kb on - strand at 658.229 kb on - strand, within PGA1_c06430 at 658.459 kb on + strand, within PGA1_c06430 at 658.467 kb on + strand, within PGA1_c06430 at 658.475 kb on - strand, within PGA1_c06430 at 658.549 kb on + strand, within PGA1_c06430 at 658.562 kb on + strand, within PGA1_c06430 at 658.570 kb on - strand, within PGA1_c06430 at 658.599 kb on + strand, within PGA1_c06430 at 658.654 kb on + strand, within PGA1_c06430 at 658.721 kb on - strand, within PGA1_c06430 at 658.721 kb on - strand, within PGA1_c06430 at 658.786 kb on - strand at 658.825 kb on - strand at 658.835 kb on + strand at 658.840 kb on + strand at 658.876 kb on + strand at 658.884 kb on - strand at 658.907 kb on + strand at 658.907 kb on + strand at 658.915 kb on + strand at 658.915 kb on + strand at 659.027 kb on - strand, within PGA1_c06440 at 659.103 kb on - strand, within PGA1_c06440 at 659.239 kb on + strand, within PGA1_c06440 at 659.259 kb on + strand, within PGA1_c06440 at 659.273 kb on + strand, within PGA1_c06440 at 659.274 kb on + strand, within PGA1_c06440 at 659.284 kb on + strand, within PGA1_c06440 at 659.312 kb on - strand, within PGA1_c06440 at 659.369 kb on + strand, within PGA1_c06440 at 659.384 kb on + strand, within PGA1_c06440 at 659.415 kb on + strand at 659.420 kb on + strand at 659.437 kb on - strand at 659.534 kb on - strand at 659.550 kb on + strand, within PGA1_c06450 at 659.566 kb on - strand, within PGA1_c06450 at 659.581 kb on - strand, within PGA1_c06450 at 659.639 kb on - strand, within PGA1_c06450 at 659.711 kb on - strand, within PGA1_c06450 at 659.713 kb on + strand, within PGA1_c06450 at 659.713 kb on + strand, within PGA1_c06450 at 659.721 kb on - strand, within PGA1_c06450 at 659.721 kb on - strand, within PGA1_c06450 at 659.726 kb on - strand, within PGA1_c06450 at 659.726 kb on - strand, within PGA1_c06450 at 659.730 kb on + strand, within PGA1_c06450 at 659.795 kb on - strand, within PGA1_c06450 at 659.798 kb on + strand, within PGA1_c06450 at 659.839 kb on + strand, within PGA1_c06450 at 659.864 kb on + strand, within PGA1_c06450 at 659.870 kb on - strand, within PGA1_c06450 at 659.887 kb on - strand, within PGA1_c06450 at 660.028 kb on + strand, within PGA1_c06450 at 660.059 kb on - strand at 660.059 kb on - strand at 660.092 kb on + strand at 660.141 kb on + strand at 660.155 kb on + strand at 660.187 kb on + strand at 660.223 kb on + strand at 660.269 kb on - strand at 660.271 kb on + strand at 660.283 kb on - strand at 660.327 kb on - strand at 660.331 kb on + strand at 660.331 kb on + strand at 660.331 kb on + strand at 660.331 kb on + strand at 660.339 kb on - strand at 660.349 kb on - strand at 660.349 kb on - strand at 660.349 kb on - strand at 660.360 kb on + strand at 660.387 kb on + strand at 660.387 kb on + strand at 660.387 kb on + strand at 660.431 kb on + strand, within PGA1_c06460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 658,052 + +0.5 658,052 + -0.4 658,057 + -0.0 658,060 - +1.1 658,065 - +0.8 658,065 - +1.7 658,065 - -0.4 658,229 - PGA1_c06430 0.26 -0.3 658,459 + PGA1_c06430 0.56 +0.1 658,467 + PGA1_c06430 0.57 -0.0 658,475 - PGA1_c06430 0.58 +0.3 658,549 + PGA1_c06430 0.67 +0.3 658,562 + PGA1_c06430 0.69 -1.0 658,570 - PGA1_c06430 0.70 +0.9 658,599 + PGA1_c06430 0.74 -0.4 658,654 + PGA1_c06430 0.81 -0.2 658,721 - PGA1_c06430 0.89 -2.6 658,721 - PGA1_c06430 0.89 +0.1 658,786 - +1.4 658,825 - +0.1 658,835 + +1.0 658,840 + +0.9 658,876 + -0.9 658,884 - -1.0 658,907 + +0.9 658,907 + -0.6 658,915 + +0.9 658,915 + +0.6 659,027 - PGA1_c06440 0.19 -0.7 659,103 - PGA1_c06440 0.33 -0.6 659,239 + PGA1_c06440 0.59 -0.2 659,259 + PGA1_c06440 0.63 +2.0 659,273 + PGA1_c06440 0.65 -0.8 659,274 + PGA1_c06440 0.66 -0.8 659,284 + PGA1_c06440 0.67 -1.6 659,312 - PGA1_c06440 0.73 +0.7 659,369 + PGA1_c06440 0.83 +0.1 659,384 + PGA1_c06440 0.86 -1.1 659,415 + +0.1 659,420 + +0.1 659,437 - -0.4 659,534 - +0.1 659,550 + PGA1_c06450 0.12 -0.6 659,566 - PGA1_c06450 0.15 -0.2 659,581 - PGA1_c06450 0.17 +1.0 659,639 - PGA1_c06450 0.26 -0.8 659,711 - PGA1_c06450 0.38 +0.6 659,713 + PGA1_c06450 0.38 +0.2 659,713 + PGA1_c06450 0.38 +1.2 659,721 - PGA1_c06450 0.39 -0.3 659,721 - PGA1_c06450 0.39 -0.6 659,726 - PGA1_c06450 0.40 +0.6 659,726 - PGA1_c06450 0.40 +0.4 659,730 + PGA1_c06450 0.40 +0.5 659,795 - PGA1_c06450 0.51 -0.4 659,798 + PGA1_c06450 0.51 +0.8 659,839 + PGA1_c06450 0.57 +0.5 659,864 + PGA1_c06450 0.61 -2.2 659,870 - PGA1_c06450 0.62 -1.3 659,887 - PGA1_c06450 0.65 +1.0 660,028 + PGA1_c06450 0.87 +0.5 660,059 - +0.8 660,059 - +0.3 660,092 + +0.7 660,141 + +0.2 660,155 + -0.1 660,187 + +1.7 660,223 + -0.2 660,269 - -0.8 660,271 + -1.3 660,283 - +1.2 660,327 - -0.2 660,331 + +1.4 660,331 + +0.1 660,331 + -0.9 660,331 + -0.8 660,339 - +1.0 660,349 - +0.9 660,349 - +0.9 660,349 - -1.7 660,360 + -0.3 660,387 + +1.1 660,387 + +1.4 660,387 + +0.9 660,431 + PGA1_c06460 0.11 -1.0
Or see this region's nucleotide sequence