Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05430 and PGA1_c05440 overlap by 4 nucleotides PGA1_c05440 and PGA1_c05450 are separated by 147 nucleotides
PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508
_c05430
PGA1_c05440: PGA1_c05440 - surface antigen-like protein, at 554,505 to 556,448
_c05440
PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828
_c05450
Position (kb)
554
555
556
557 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 553.522 kb on + strand, within PGA1_c05430 at 553.546 kb on + strand, within PGA1_c05430 at 553.660 kb on + strand, within PGA1_c05430 at 553.788 kb on - strand, within PGA1_c05430 at 553.819 kb on + strand, within PGA1_c05430 at 553.927 kb on - strand, within PGA1_c05430 at 553.980 kb on + strand, within PGA1_c05430 at 553.999 kb on + strand, within PGA1_c05430 at 554.007 kb on - strand, within PGA1_c05430 at 554.111 kb on - strand, within PGA1_c05430 at 554.116 kb on - strand, within PGA1_c05430 at 554.116 kb on - strand, within PGA1_c05430 at 554.227 kb on - strand at 554.252 kb on - strand at 554.256 kb on + strand at 554.318 kb on + strand at 554.326 kb on - strand at 554.328 kb on - strand at 554.390 kb on + strand at 554.407 kb on + strand at 554.430 kb on + strand at 554.452 kb on + strand at 554.470 kb on - strand at 554.571 kb on + strand at 554.608 kb on + strand at 554.618 kb on + strand at 554.707 kb on - strand, within PGA1_c05440 at 554.735 kb on - strand, within PGA1_c05440 at 554.737 kb on + strand, within PGA1_c05440 at 554.773 kb on - strand, within PGA1_c05440 at 554.773 kb on - strand, within PGA1_c05440 at 554.839 kb on + strand, within PGA1_c05440 at 554.871 kb on - strand, within PGA1_c05440 at 554.982 kb on - strand, within PGA1_c05440 at 555.011 kb on - strand, within PGA1_c05440 at 555.209 kb on + strand, within PGA1_c05440 at 555.209 kb on + strand, within PGA1_c05440 at 555.231 kb on - strand, within PGA1_c05440 at 555.237 kb on + strand, within PGA1_c05440 at 555.290 kb on - strand, within PGA1_c05440 at 555.415 kb on - strand, within PGA1_c05440 at 555.430 kb on - strand, within PGA1_c05440 at 555.430 kb on - strand, within PGA1_c05440 at 555.508 kb on - strand, within PGA1_c05440 at 555.508 kb on - strand, within PGA1_c05440 at 555.606 kb on + strand, within PGA1_c05440 at 555.672 kb on - strand, within PGA1_c05440 at 555.675 kb on + strand, within PGA1_c05440 at 555.780 kb on - strand, within PGA1_c05440 at 555.784 kb on + strand, within PGA1_c05440 at 555.791 kb on + strand, within PGA1_c05440 at 555.842 kb on + strand, within PGA1_c05440 at 555.870 kb on + strand, within PGA1_c05440 at 556.035 kb on + strand, within PGA1_c05440 at 556.083 kb on - strand, within PGA1_c05440 at 556.093 kb on - strand, within PGA1_c05440 at 556.145 kb on - strand, within PGA1_c05440 at 556.338 kb on - strand at 556.355 kb on + strand at 556.356 kb on + strand at 556.428 kb on - strand at 556.441 kb on - strand at 556.441 kb on - strand at 556.445 kb on + strand at 556.445 kb on + strand at 556.469 kb on + strand at 556.477 kb on - strand at 556.594 kb on + strand at 556.599 kb on + strand at 556.602 kb on - strand at 556.602 kb on - strand at 556.704 kb on + strand at 556.707 kb on - strand at 556.712 kb on - strand at 556.755 kb on + strand, within PGA1_c05450 at 556.756 kb on - strand, within PGA1_c05450 at 556.787 kb on + strand, within PGA1_c05450 at 556.804 kb on + strand, within PGA1_c05450 at 556.812 kb on - strand, within PGA1_c05450 at 556.838 kb on + strand, within PGA1_c05450 at 556.846 kb on + strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.860 kb on - strand, within PGA1_c05450 at 556.876 kb on - strand, within PGA1_c05450 at 556.876 kb on - strand, within PGA1_c05450 at 556.881 kb on - strand, within PGA1_c05450 at 556.916 kb on + strand, within PGA1_c05450 at 556.936 kb on - strand, within PGA1_c05450 at 556.956 kb on - strand, within PGA1_c05450 at 557.020 kb on - strand, within PGA1_c05450 at 557.078 kb on - strand, within PGA1_c05450 at 557.132 kb on + strand, within PGA1_c05450 at 557.255 kb on + strand, within PGA1_c05450 at 557.271 kb on - strand, within PGA1_c05450 at 557.285 kb on - strand, within PGA1_c05450 at 557.314 kb on + strand, within PGA1_c05450 at 557.340 kb on - strand, within PGA1_c05450 at 557.378 kb on - strand, within PGA1_c05450 at 557.396 kb on + strand, within PGA1_c05450 at 557.419 kb on - strand, within PGA1_c05450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 553,522 + PGA1_c05430 0.73 -0.1 553,546 + PGA1_c05430 0.74 -2.4 553,660 + PGA1_c05430 0.77 +0.6 553,788 - PGA1_c05430 0.80 -1.8 553,819 + PGA1_c05430 0.81 -1.4 553,927 - PGA1_c05430 0.84 +0.2 553,980 + PGA1_c05430 0.86 +0.0 553,999 + PGA1_c05430 0.86 -0.8 554,007 - PGA1_c05430 0.86 +0.2 554,111 - PGA1_c05430 0.89 +0.1 554,116 - PGA1_c05430 0.89 -0.4 554,116 - PGA1_c05430 0.89 -0.4 554,227 - -0.2 554,252 - -0.1 554,256 + -0.4 554,318 + +0.1 554,326 - -2.4 554,328 - -2.0 554,390 + +1.2 554,407 + -0.9 554,430 + +0.1 554,452 + +0.2 554,470 - -1.4 554,571 + +0.3 554,608 + -0.9 554,618 + +0.6 554,707 - PGA1_c05440 0.10 +0.6 554,735 - PGA1_c05440 0.12 -1.1 554,737 + PGA1_c05440 0.12 -0.9 554,773 - PGA1_c05440 0.14 +0.3 554,773 - PGA1_c05440 0.14 +0.6 554,839 + PGA1_c05440 0.17 -1.9 554,871 - PGA1_c05440 0.19 -2.0 554,982 - PGA1_c05440 0.25 +1.1 555,011 - PGA1_c05440 0.26 -0.5 555,209 + PGA1_c05440 0.36 -0.9 555,209 + PGA1_c05440 0.36 -0.7 555,231 - PGA1_c05440 0.37 -0.6 555,237 + PGA1_c05440 0.38 -0.9 555,290 - PGA1_c05440 0.40 -0.3 555,415 - PGA1_c05440 0.47 -0.2 555,430 - PGA1_c05440 0.48 -0.4 555,430 - PGA1_c05440 0.48 +0.4 555,508 - PGA1_c05440 0.52 -1.1 555,508 - PGA1_c05440 0.52 -0.4 555,606 + PGA1_c05440 0.57 -0.1 555,672 - PGA1_c05440 0.60 -0.5 555,675 + PGA1_c05440 0.60 -0.2 555,780 - PGA1_c05440 0.66 -0.8 555,784 + PGA1_c05440 0.66 -0.4 555,791 + PGA1_c05440 0.66 -0.4 555,842 + PGA1_c05440 0.69 -0.9 555,870 + PGA1_c05440 0.70 -2.2 556,035 + PGA1_c05440 0.79 -0.6 556,083 - PGA1_c05440 0.81 +0.1 556,093 - PGA1_c05440 0.82 -0.1 556,145 - PGA1_c05440 0.84 -0.9 556,338 - -0.9 556,355 + +1.1 556,356 + -1.0 556,428 - -0.5 556,441 - -0.2 556,441 - +1.2 556,445 + -0.9 556,445 + +0.5 556,469 + +1.0 556,477 - -0.4 556,594 + -0.9 556,599 + -0.5 556,602 - +0.3 556,602 - +0.7 556,704 + +0.3 556,707 - -0.3 556,712 - +1.6 556,755 + PGA1_c05450 0.13 -0.8 556,756 - PGA1_c05450 0.13 +0.1 556,787 + PGA1_c05450 0.15 +0.1 556,804 + PGA1_c05450 0.17 -1.1 556,812 - PGA1_c05450 0.18 -0.8 556,838 + PGA1_c05450 0.20 +0.3 556,846 + PGA1_c05450 0.20 -0.0 556,846 - PGA1_c05450 0.20 +0.6 556,846 - PGA1_c05450 0.20 +2.0 556,846 - PGA1_c05450 0.20 -0.3 556,846 - PGA1_c05450 0.20 +0.2 556,846 - PGA1_c05450 0.20 -0.6 556,860 - PGA1_c05450 0.21 +0.4 556,876 - PGA1_c05450 0.23 -1.4 556,876 - PGA1_c05450 0.23 +0.8 556,881 - PGA1_c05450 0.23 +1.4 556,916 + PGA1_c05450 0.26 -2.5 556,936 - PGA1_c05450 0.28 -0.2 556,956 - PGA1_c05450 0.29 -0.6 557,020 - PGA1_c05450 0.34 +0.1 557,078 - PGA1_c05450 0.39 -1.5 557,132 + PGA1_c05450 0.43 -0.1 557,255 + PGA1_c05450 0.53 -0.3 557,271 - PGA1_c05450 0.55 -2.3 557,285 - PGA1_c05450 0.56 +2.0 557,314 + PGA1_c05450 0.58 +0.5 557,340 - PGA1_c05450 0.60 -1.2 557,378 - PGA1_c05450 0.63 -0.8 557,396 + PGA1_c05450 0.65 -0.3 557,419 - PGA1_c05450 0.67 +0.2
Or see this region's nucleotide sequence