Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05440

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05430 and PGA1_c05440 overlap by 4 nucleotidesPGA1_c05440 and PGA1_c05450 are separated by 147 nucleotides PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508 _c05430 PGA1_c05440: PGA1_c05440 - surface antigen-like protein, at 554,505 to 556,448 _c05440 PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828 _c05450 Position (kb) 554 555 556 557Strain fitness (log2 ratio) -2 -1 0 1 2at 553.522 kb on + strand, within PGA1_c05430at 553.546 kb on + strand, within PGA1_c05430at 553.660 kb on + strand, within PGA1_c05430at 553.788 kb on - strand, within PGA1_c05430at 553.819 kb on + strand, within PGA1_c05430at 553.927 kb on - strand, within PGA1_c05430at 553.980 kb on + strand, within PGA1_c05430at 553.999 kb on + strand, within PGA1_c05430at 554.007 kb on - strand, within PGA1_c05430at 554.111 kb on - strand, within PGA1_c05430at 554.116 kb on - strand, within PGA1_c05430at 554.116 kb on - strand, within PGA1_c05430at 554.227 kb on - strandat 554.252 kb on - strandat 554.256 kb on + strandat 554.318 kb on + strandat 554.326 kb on - strandat 554.328 kb on - strandat 554.390 kb on + strandat 554.407 kb on + strandat 554.430 kb on + strandat 554.452 kb on + strandat 554.470 kb on - strandat 554.571 kb on + strandat 554.608 kb on + strandat 554.618 kb on + strandat 554.707 kb on - strand, within PGA1_c05440at 554.735 kb on - strand, within PGA1_c05440at 554.737 kb on + strand, within PGA1_c05440at 554.773 kb on - strand, within PGA1_c05440at 554.773 kb on - strand, within PGA1_c05440at 554.839 kb on + strand, within PGA1_c05440at 554.871 kb on - strand, within PGA1_c05440at 554.982 kb on - strand, within PGA1_c05440at 555.011 kb on - strand, within PGA1_c05440at 555.209 kb on + strand, within PGA1_c05440at 555.209 kb on + strand, within PGA1_c05440at 555.231 kb on - strand, within PGA1_c05440at 555.237 kb on + strand, within PGA1_c05440at 555.290 kb on - strand, within PGA1_c05440at 555.415 kb on - strand, within PGA1_c05440at 555.430 kb on - strand, within PGA1_c05440at 555.430 kb on - strand, within PGA1_c05440at 555.508 kb on - strand, within PGA1_c05440at 555.508 kb on - strand, within PGA1_c05440at 555.606 kb on + strand, within PGA1_c05440at 555.672 kb on - strand, within PGA1_c05440at 555.675 kb on + strand, within PGA1_c05440at 555.780 kb on - strand, within PGA1_c05440at 555.784 kb on + strand, within PGA1_c05440at 555.791 kb on + strand, within PGA1_c05440at 555.842 kb on + strand, within PGA1_c05440at 555.870 kb on + strand, within PGA1_c05440at 556.035 kb on + strand, within PGA1_c05440at 556.083 kb on - strand, within PGA1_c05440at 556.093 kb on - strand, within PGA1_c05440at 556.145 kb on - strand, within PGA1_c05440at 556.338 kb on - strandat 556.355 kb on + strandat 556.356 kb on + strandat 556.428 kb on - strandat 556.441 kb on - strandat 556.441 kb on - strandat 556.445 kb on + strandat 556.445 kb on + strandat 556.469 kb on + strandat 556.477 kb on - strandat 556.594 kb on + strandat 556.599 kb on + strandat 556.602 kb on - strandat 556.602 kb on - strandat 556.704 kb on + strandat 556.707 kb on - strandat 556.712 kb on - strandat 556.755 kb on + strand, within PGA1_c05450at 556.756 kb on - strand, within PGA1_c05450at 556.787 kb on + strand, within PGA1_c05450at 556.804 kb on + strand, within PGA1_c05450at 556.812 kb on - strand, within PGA1_c05450at 556.838 kb on + strand, within PGA1_c05450at 556.846 kb on + strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.860 kb on - strand, within PGA1_c05450at 556.876 kb on - strand, within PGA1_c05450at 556.876 kb on - strand, within PGA1_c05450at 556.881 kb on - strand, within PGA1_c05450at 556.916 kb on + strand, within PGA1_c05450at 556.936 kb on - strand, within PGA1_c05450at 556.956 kb on - strand, within PGA1_c05450at 557.020 kb on - strand, within PGA1_c05450at 557.078 kb on - strand, within PGA1_c05450at 557.132 kb on + strand, within PGA1_c05450at 557.255 kb on + strand, within PGA1_c05450at 557.271 kb on - strand, within PGA1_c05450at 557.285 kb on - strand, within PGA1_c05450at 557.314 kb on + strand, within PGA1_c05450at 557.340 kb on - strand, within PGA1_c05450at 557.378 kb on - strand, within PGA1_c05450at 557.396 kb on + strand, within PGA1_c05450at 557.419 kb on - strand, within PGA1_c05450

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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553,522 + PGA1_c05430 0.73 -0.1
553,546 + PGA1_c05430 0.74 -2.4
553,660 + PGA1_c05430 0.77 +0.6
553,788 - PGA1_c05430 0.80 -1.8
553,819 + PGA1_c05430 0.81 -1.4
553,927 - PGA1_c05430 0.84 +0.2
553,980 + PGA1_c05430 0.86 +0.0
553,999 + PGA1_c05430 0.86 -0.8
554,007 - PGA1_c05430 0.86 +0.2
554,111 - PGA1_c05430 0.89 +0.1
554,116 - PGA1_c05430 0.89 -0.4
554,116 - PGA1_c05430 0.89 -0.4
554,227 - -0.2
554,252 - -0.1
554,256 + -0.4
554,318 + +0.1
554,326 - -2.4
554,328 - -2.0
554,390 + +1.2
554,407 + -0.9
554,430 + +0.1
554,452 + +0.2
554,470 - -1.4
554,571 + +0.3
554,608 + -0.9
554,618 + +0.6
554,707 - PGA1_c05440 0.10 +0.6
554,735 - PGA1_c05440 0.12 -1.1
554,737 + PGA1_c05440 0.12 -0.9
554,773 - PGA1_c05440 0.14 +0.3
554,773 - PGA1_c05440 0.14 +0.6
554,839 + PGA1_c05440 0.17 -1.9
554,871 - PGA1_c05440 0.19 -2.0
554,982 - PGA1_c05440 0.25 +1.1
555,011 - PGA1_c05440 0.26 -0.5
555,209 + PGA1_c05440 0.36 -0.9
555,209 + PGA1_c05440 0.36 -0.7
555,231 - PGA1_c05440 0.37 -0.6
555,237 + PGA1_c05440 0.38 -0.9
555,290 - PGA1_c05440 0.40 -0.3
555,415 - PGA1_c05440 0.47 -0.2
555,430 - PGA1_c05440 0.48 -0.4
555,430 - PGA1_c05440 0.48 +0.4
555,508 - PGA1_c05440 0.52 -1.1
555,508 - PGA1_c05440 0.52 -0.4
555,606 + PGA1_c05440 0.57 -0.1
555,672 - PGA1_c05440 0.60 -0.5
555,675 + PGA1_c05440 0.60 -0.2
555,780 - PGA1_c05440 0.66 -0.8
555,784 + PGA1_c05440 0.66 -0.4
555,791 + PGA1_c05440 0.66 -0.4
555,842 + PGA1_c05440 0.69 -0.9
555,870 + PGA1_c05440 0.70 -2.2
556,035 + PGA1_c05440 0.79 -0.6
556,083 - PGA1_c05440 0.81 +0.1
556,093 - PGA1_c05440 0.82 -0.1
556,145 - PGA1_c05440 0.84 -0.9
556,338 - -0.9
556,355 + +1.1
556,356 + -1.0
556,428 - -0.5
556,441 - -0.2
556,441 - +1.2
556,445 + -0.9
556,445 + +0.5
556,469 + +1.0
556,477 - -0.4
556,594 + -0.9
556,599 + -0.5
556,602 - +0.3
556,602 - +0.7
556,704 + +0.3
556,707 - -0.3
556,712 - +1.6
556,755 + PGA1_c05450 0.13 -0.8
556,756 - PGA1_c05450 0.13 +0.1
556,787 + PGA1_c05450 0.15 +0.1
556,804 + PGA1_c05450 0.17 -1.1
556,812 - PGA1_c05450 0.18 -0.8
556,838 + PGA1_c05450 0.20 +0.3
556,846 + PGA1_c05450 0.20 -0.0
556,846 - PGA1_c05450 0.20 +0.6
556,846 - PGA1_c05450 0.20 +2.0
556,846 - PGA1_c05450 0.20 -0.3
556,846 - PGA1_c05450 0.20 +0.2
556,846 - PGA1_c05450 0.20 -0.6
556,860 - PGA1_c05450 0.21 +0.4
556,876 - PGA1_c05450 0.23 -1.4
556,876 - PGA1_c05450 0.23 +0.8
556,881 - PGA1_c05450 0.23 +1.4
556,916 + PGA1_c05450 0.26 -2.5
556,936 - PGA1_c05450 0.28 -0.2
556,956 - PGA1_c05450 0.29 -0.6
557,020 - PGA1_c05450 0.34 +0.1
557,078 - PGA1_c05450 0.39 -1.5
557,132 + PGA1_c05450 0.43 -0.1
557,255 + PGA1_c05450 0.53 -0.3
557,271 - PGA1_c05450 0.55 -2.3
557,285 - PGA1_c05450 0.56 +2.0
557,314 + PGA1_c05450 0.58 +0.5
557,340 - PGA1_c05450 0.60 -1.2
557,378 - PGA1_c05450 0.63 -0.8
557,396 + PGA1_c05450 0.65 -0.3
557,419 - PGA1_c05450 0.67 +0.2

Or see this region's nucleotide sequence