Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05430

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05420 and PGA1_c05430 are separated by 24 nucleotidesPGA1_c05430 and PGA1_c05440 overlap by 4 nucleotides PGA1_c05420: PGA1_c05420 - glucokinase (EC 2.7.1.2) (from data), at 549,868 to 550,818 _c05420 PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508 _c05430 PGA1_c05440: PGA1_c05440 - surface antigen-like protein, at 554,505 to 556,448 _c05440 Position (kb) 550 551 552 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 550.121 kb on - strand, within PGA1_c05420at 550.126 kb on - strand, within PGA1_c05420at 550.235 kb on - strand, within PGA1_c05420at 550.361 kb on + strand, within PGA1_c05420at 550.677 kb on - strand, within PGA1_c05420at 550.834 kb on - strandat 550.897 kb on - strandat 550.897 kb on - strandat 550.917 kb on - strandat 550.979 kb on + strandat 550.992 kb on - strandat 551.032 kb on - strandat 551.148 kb on + strandat 551.149 kb on + strandat 551.149 kb on + strandat 551.210 kb on - strand, within PGA1_c05430at 551.267 kb on - strand, within PGA1_c05430at 551.274 kb on - strand, within PGA1_c05430at 551.292 kb on - strand, within PGA1_c05430at 551.405 kb on + strand, within PGA1_c05430at 551.408 kb on - strand, within PGA1_c05430at 551.518 kb on + strand, within PGA1_c05430at 551.672 kb on - strand, within PGA1_c05430at 551.736 kb on + strand, within PGA1_c05430at 551.744 kb on - strand, within PGA1_c05430at 551.912 kb on + strand, within PGA1_c05430at 551.920 kb on - strand, within PGA1_c05430at 551.920 kb on - strand, within PGA1_c05430at 551.920 kb on - strand, within PGA1_c05430at 551.930 kb on - strand, within PGA1_c05430at 551.934 kb on + strand, within PGA1_c05430at 552.009 kb on - strand, within PGA1_c05430at 552.101 kb on + strand, within PGA1_c05430at 552.101 kb on - strand, within PGA1_c05430at 552.101 kb on - strand, within PGA1_c05430at 552.101 kb on - strand, within PGA1_c05430at 552.102 kb on - strand, within PGA1_c05430at 552.102 kb on - strand, within PGA1_c05430at 552.142 kb on + strand, within PGA1_c05430at 552.150 kb on - strand, within PGA1_c05430at 552.150 kb on - strand, within PGA1_c05430at 552.150 kb on - strand, within PGA1_c05430at 552.161 kb on - strand, within PGA1_c05430at 552.261 kb on - strand, within PGA1_c05430at 552.329 kb on + strand, within PGA1_c05430at 552.331 kb on + strand, within PGA1_c05430at 552.337 kb on - strand, within PGA1_c05430at 552.345 kb on - strand, within PGA1_c05430at 552.379 kb on + strand, within PGA1_c05430at 552.387 kb on - strand, within PGA1_c05430at 552.387 kb on - strand, within PGA1_c05430at 552.458 kb on - strand, within PGA1_c05430at 552.465 kb on - strand, within PGA1_c05430at 552.526 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.570 kb on + strand, within PGA1_c05430at 552.578 kb on - strand, within PGA1_c05430at 552.578 kb on - strand, within PGA1_c05430at 552.578 kb on - strand, within PGA1_c05430at 552.690 kb on + strand, within PGA1_c05430at 552.816 kb on - strand, within PGA1_c05430at 552.976 kb on + strand, within PGA1_c05430at 553.090 kb on - strand, within PGA1_c05430at 553.132 kb on + strand, within PGA1_c05430at 553.230 kb on - strand, within PGA1_c05430at 553.278 kb on + strand, within PGA1_c05430at 553.278 kb on + strand, within PGA1_c05430at 553.278 kb on + strand, within PGA1_c05430at 553.278 kb on + strand, within PGA1_c05430at 553.294 kb on - strand, within PGA1_c05430at 553.453 kb on - strand, within PGA1_c05430at 553.478 kb on - strand, within PGA1_c05430at 553.499 kb on + strand, within PGA1_c05430at 553.522 kb on + strand, within PGA1_c05430at 553.546 kb on + strand, within PGA1_c05430at 553.660 kb on + strand, within PGA1_c05430at 553.788 kb on - strand, within PGA1_c05430at 553.819 kb on + strand, within PGA1_c05430at 553.927 kb on - strand, within PGA1_c05430at 553.980 kb on + strand, within PGA1_c05430at 553.999 kb on + strand, within PGA1_c05430at 554.007 kb on - strand, within PGA1_c05430at 554.111 kb on - strand, within PGA1_c05430at 554.116 kb on - strand, within PGA1_c05430at 554.116 kb on - strand, within PGA1_c05430at 554.227 kb on - strandat 554.252 kb on - strandat 554.256 kb on + strandat 554.318 kb on + strandat 554.326 kb on - strandat 554.328 kb on - strandat 554.390 kb on + strandat 554.407 kb on + strandat 554.430 kb on + strandat 554.452 kb on + strandat 554.470 kb on - strandat 554.571 kb on + strandat 554.608 kb on + strandat 554.618 kb on + strandat 554.707 kb on - strand, within PGA1_c05440at 554.735 kb on - strand, within PGA1_c05440at 554.737 kb on + strand, within PGA1_c05440at 554.773 kb on - strand, within PGA1_c05440at 554.773 kb on - strand, within PGA1_c05440at 554.839 kb on + strand, within PGA1_c05440at 554.871 kb on - strand, within PGA1_c05440at 554.982 kb on - strand, within PGA1_c05440at 555.011 kb on - strand, within PGA1_c05440at 555.209 kb on + strand, within PGA1_c05440at 555.209 kb on + strand, within PGA1_c05440at 555.231 kb on - strand, within PGA1_c05440at 555.237 kb on + strand, within PGA1_c05440at 555.290 kb on - strand, within PGA1_c05440at 555.415 kb on - strand, within PGA1_c05440at 555.430 kb on - strand, within PGA1_c05440at 555.430 kb on - strand, within PGA1_c05440at 555.508 kb on - strand, within PGA1_c05440at 555.508 kb on - strand, within PGA1_c05440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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550,121 - PGA1_c05420 0.27 -0.4
550,126 - PGA1_c05420 0.27 +1.4
550,235 - PGA1_c05420 0.39 +1.1
550,361 + PGA1_c05420 0.52 +0.1
550,677 - PGA1_c05420 0.85 -0.4
550,834 - +0.4
550,897 - -0.1
550,897 - -2.4
550,917 - +2.4
550,979 + +0.1
550,992 - +0.9
551,032 - -0.2
551,148 + -0.1
551,149 + +0.2
551,149 + -0.6
551,210 - PGA1_c05430 0.10 +1.1
551,267 - PGA1_c05430 0.12 +1.1
551,274 - PGA1_c05430 0.12 +0.3
551,292 - PGA1_c05430 0.12 +0.1
551,405 + PGA1_c05430 0.15 -1.5
551,408 - PGA1_c05430 0.15 -0.7
551,518 + PGA1_c05430 0.18 -0.8
551,672 - PGA1_c05430 0.23 -1.2
551,736 + PGA1_c05430 0.24 -0.8
551,744 - PGA1_c05430 0.25 +0.6
551,912 + PGA1_c05430 0.29 -0.2
551,920 - PGA1_c05430 0.29 -0.4
551,920 - PGA1_c05430 0.29 +0.6
551,920 - PGA1_c05430 0.29 -1.0
551,930 - PGA1_c05430 0.30 +1.6
551,934 + PGA1_c05430 0.30 -0.4
552,009 - PGA1_c05430 0.32 -2.5
552,101 + PGA1_c05430 0.34 -1.2
552,101 - PGA1_c05430 0.34 -0.7
552,101 - PGA1_c05430 0.34 -0.4
552,101 - PGA1_c05430 0.34 -0.7
552,102 - PGA1_c05430 0.34 -1.4
552,102 - PGA1_c05430 0.34 -1.0
552,142 + PGA1_c05430 0.35 -0.4
552,150 - PGA1_c05430 0.36 -0.5
552,150 - PGA1_c05430 0.36 -0.5
552,150 - PGA1_c05430 0.36 -1.0
552,161 - PGA1_c05430 0.36 -0.5
552,261 - PGA1_c05430 0.39 -0.4
552,329 + PGA1_c05430 0.41 +1.2
552,331 + PGA1_c05430 0.41 -0.1
552,337 - PGA1_c05430 0.41 -1.4
552,345 - PGA1_c05430 0.41 -0.7
552,379 + PGA1_c05430 0.42 -0.7
552,387 - PGA1_c05430 0.42 -0.8
552,387 - PGA1_c05430 0.42 -1.4
552,458 - PGA1_c05430 0.44 +0.3
552,465 - PGA1_c05430 0.44 -0.0
552,526 + PGA1_c05430 0.46 -2.2
552,570 + PGA1_c05430 0.47 +0.6
552,570 + PGA1_c05430 0.47 -0.9
552,570 + PGA1_c05430 0.47 +1.4
552,570 + PGA1_c05430 0.47 -1.2
552,570 + PGA1_c05430 0.47 +0.1
552,570 + PGA1_c05430 0.47 -2.0
552,570 + PGA1_c05430 0.47 -0.2
552,570 + PGA1_c05430 0.47 +0.2
552,578 - PGA1_c05430 0.47 -1.1
552,578 - PGA1_c05430 0.47 -1.7
552,578 - PGA1_c05430 0.47 -1.7
552,690 + PGA1_c05430 0.50 +0.6
552,816 - PGA1_c05430 0.54 -0.5
552,976 + PGA1_c05430 0.58 -0.4
553,090 - PGA1_c05430 0.61 +0.6
553,132 + PGA1_c05430 0.62 -0.4
553,230 - PGA1_c05430 0.65 -0.4
553,278 + PGA1_c05430 0.66 -0.1
553,278 + PGA1_c05430 0.66 -1.2
553,278 + PGA1_c05430 0.66 -1.0
553,278 + PGA1_c05430 0.66 -0.1
553,294 - PGA1_c05430 0.67 -1.0
553,453 - PGA1_c05430 0.71 -1.5
553,478 - PGA1_c05430 0.72 +0.3
553,499 + PGA1_c05430 0.72 -2.0
553,522 + PGA1_c05430 0.73 -0.1
553,546 + PGA1_c05430 0.74 -2.4
553,660 + PGA1_c05430 0.77 +0.6
553,788 - PGA1_c05430 0.80 -1.8
553,819 + PGA1_c05430 0.81 -1.4
553,927 - PGA1_c05430 0.84 +0.2
553,980 + PGA1_c05430 0.86 +0.0
553,999 + PGA1_c05430 0.86 -0.8
554,007 - PGA1_c05430 0.86 +0.2
554,111 - PGA1_c05430 0.89 +0.1
554,116 - PGA1_c05430 0.89 -0.4
554,116 - PGA1_c05430 0.89 -0.4
554,227 - -0.2
554,252 - -0.1
554,256 + -0.4
554,318 + +0.1
554,326 - -2.4
554,328 - -2.0
554,390 + +1.2
554,407 + -0.9
554,430 + +0.1
554,452 + +0.2
554,470 - -1.4
554,571 + +0.3
554,608 + -0.9
554,618 + +0.6
554,707 - PGA1_c05440 0.10 +0.6
554,735 - PGA1_c05440 0.12 -1.1
554,737 + PGA1_c05440 0.12 -0.9
554,773 - PGA1_c05440 0.14 +0.3
554,773 - PGA1_c05440 0.14 +0.6
554,839 + PGA1_c05440 0.17 -1.9
554,871 - PGA1_c05440 0.19 -2.0
554,982 - PGA1_c05440 0.25 +1.1
555,011 - PGA1_c05440 0.26 -0.5
555,209 + PGA1_c05440 0.36 -0.9
555,209 + PGA1_c05440 0.36 -0.7
555,231 - PGA1_c05440 0.37 -0.6
555,237 + PGA1_c05440 0.38 -0.9
555,290 - PGA1_c05440 0.40 -0.3
555,415 - PGA1_c05440 0.47 -0.2
555,430 - PGA1_c05440 0.48 -0.4
555,430 - PGA1_c05440 0.48 +0.4
555,508 - PGA1_c05440 0.52 -1.1
555,508 - PGA1_c05440 0.52 -0.4

Or see this region's nucleotide sequence