Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05070 and PGA1_c05080 overlap by 1 nucleotides PGA1_c05080 and PGA1_c05090 are separated by 425 nucleotides PGA1_c05090 and PGA1_c05100 are separated by 27 nucleotides PGA1_c05100 and PGA1_c05110 are separated by 161 nucleotides
PGA1_c05070: PGA1_c05070 - putative pyridoxal-phosphate-dependent aminotransferase, at 499,811 to 500,908
_c05070
PGA1_c05080: PGA1_c05080 - WxcM-like, C-terminal., at 500,908 to 501,342
_c05080
PGA1_c05090: PGA1_c05090 - putative glycosyl transferase, at 501,768 to 502,712
_c05090
PGA1_c05100: PGA1_c05100 - transcriptional regulator, GntR type, at 502,740 to 503,402
_c05100
PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523
_c05110
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 500.787 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.805 kb on - strand at 500.813 kb on + strand at 500.831 kb on - strand at 500.831 kb on - strand at 500.834 kb on + strand at 500.880 kb on + strand at 500.888 kb on - strand at 500.910 kb on + strand at 500.958 kb on - strand, within PGA1_c05080 at 500.958 kb on - strand, within PGA1_c05080 at 500.973 kb on - strand, within PGA1_c05080 at 500.980 kb on + strand, within PGA1_c05080 at 500.981 kb on + strand, within PGA1_c05080 at 500.989 kb on + strand, within PGA1_c05080 at 500.995 kb on - strand, within PGA1_c05080 at 501.095 kb on + strand, within PGA1_c05080 at 501.100 kb on + strand, within PGA1_c05080 at 501.100 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.127 kb on - strand, within PGA1_c05080 at 501.145 kb on + strand, within PGA1_c05080 at 501.152 kb on + strand, within PGA1_c05080 at 501.152 kb on - strand, within PGA1_c05080 at 501.152 kb on - strand, within PGA1_c05080 at 501.153 kb on - strand, within PGA1_c05080 at 501.160 kb on - strand, within PGA1_c05080 at 501.162 kb on - strand, within PGA1_c05080 at 501.179 kb on + strand, within PGA1_c05080 at 501.203 kb on + strand, within PGA1_c05080 at 501.232 kb on - strand, within PGA1_c05080 at 501.259 kb on - strand, within PGA1_c05080 at 501.318 kb on + strand at 501.360 kb on - strand at 501.370 kb on - strand at 501.370 kb on - strand at 501.386 kb on + strand at 501.386 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.391 kb on - strand at 501.394 kb on - strand at 501.395 kb on + strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.405 kb on + strand at 501.413 kb on - strand at 501.418 kb on - strand at 501.439 kb on - strand at 501.466 kb on + strand at 501.476 kb on - strand at 501.486 kb on - strand at 501.494 kb on - strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.504 kb on - strand at 501.522 kb on + strand at 501.522 kb on + strand at 501.552 kb on + strand at 501.552 kb on + strand at 501.552 kb on + strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.567 kb on - strand at 501.604 kb on + strand at 501.629 kb on - strand at 501.630 kb on + strand at 501.641 kb on - strand at 501.646 kb on + strand at 501.647 kb on - strand at 501.654 kb on - strand at 501.662 kb on + strand at 501.670 kb on - strand at 501.670 kb on - strand at 501.699 kb on + strand at 501.699 kb on - strand at 501.747 kb on + strand at 501.760 kb on - strand at 501.792 kb on - strand at 501.792 kb on - strand at 501.802 kb on + strand at 501.810 kb on + strand at 501.810 kb on + strand at 501.810 kb on + strand at 501.810 kb on - strand at 501.810 kb on - strand at 501.818 kb on - strand at 501.818 kb on - strand at 501.828 kb on - strand at 501.892 kb on + strand, within PGA1_c05090 at 501.899 kb on + strand, within PGA1_c05090 at 501.938 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.953 kb on - strand, within PGA1_c05090 at 501.963 kb on - strand, within PGA1_c05090 at 502.012 kb on + strand, within PGA1_c05090 at 502.064 kb on - strand, within PGA1_c05090 at 502.066 kb on - strand, within PGA1_c05090 at 502.068 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.098 kb on - strand, within PGA1_c05090 at 502.098 kb on - strand, within PGA1_c05090 at 502.127 kb on - strand, within PGA1_c05090 at 502.285 kb on + strand, within PGA1_c05090 at 502.285 kb on + strand, within PGA1_c05090 at 502.286 kb on + strand, within PGA1_c05090 at 502.291 kb on + strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.357 kb on + strand, within PGA1_c05090 at 502.357 kb on + strand, within PGA1_c05090 at 502.357 kb on + strand, within PGA1_c05090 at 502.394 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.399 kb on + strand, within PGA1_c05090 at 502.404 kb on + strand, within PGA1_c05090 at 502.404 kb on + strand, within PGA1_c05090 at 502.404 kb on + strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.407 kb on - strand, within PGA1_c05090 at 502.409 kb on + strand, within PGA1_c05090 at 502.409 kb on + strand, within PGA1_c05090 at 502.409 kb on + strand, within PGA1_c05090 at 502.409 kb on + strand, within PGA1_c05090 at 502.409 kb on + strand, within PGA1_c05090 at 502.409 kb on + strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.417 kb on - strand, within PGA1_c05090 at 502.643 kb on + strand at 502.651 kb on - strand at 502.651 kb on - strand at 502.660 kb on + strand at 502.660 kb on + strand at 502.697 kb on + strand at 502.722 kb on - strand at 502.745 kb on - strand at 502.751 kb on + strand at 502.751 kb on - strand at 502.759 kb on - strand at 502.759 kb on - strand at 502.783 kb on + strand at 502.808 kb on - strand, within PGA1_c05100 at 502.810 kb on + strand, within PGA1_c05100 at 502.825 kb on - strand, within PGA1_c05100 at 502.864 kb on + strand, within PGA1_c05100 at 502.872 kb on - strand, within PGA1_c05100 at 502.872 kb on - strand, within PGA1_c05100 at 502.890 kb on - strand, within PGA1_c05100 at 502.958 kb on + strand, within PGA1_c05100 at 503.016 kb on + strand, within PGA1_c05100 at 503.017 kb on - strand, within PGA1_c05100 at 503.019 kb on - strand, within PGA1_c05100 at 503.019 kb on - strand, within PGA1_c05100 at 503.053 kb on - strand, within PGA1_c05100 at 503.067 kb on + strand, within PGA1_c05100 at 503.096 kb on - strand, within PGA1_c05100 at 503.118 kb on + strand, within PGA1_c05100 at 503.118 kb on + strand, within PGA1_c05100 at 503.118 kb on + strand, within PGA1_c05100 at 503.177 kb on + strand, within PGA1_c05100 at 503.185 kb on + strand, within PGA1_c05100 at 503.193 kb on + strand, within PGA1_c05100 at 503.200 kb on + strand, within PGA1_c05100 at 503.321 kb on + strand, within PGA1_c05100 at 503.337 kb on - strand at 503.371 kb on + strand at 503.420 kb on - strand at 503.420 kb on - strand at 503.422 kb on + strand at 503.441 kb on - strand at 503.441 kb on - strand at 503.510 kb on + strand at 503.518 kb on - strand at 503.544 kb on + strand at 503.555 kb on + strand at 503.571 kb on + strand at 503.607 kb on - strand at 503.619 kb on - strand at 503.624 kb on - strand at 503.690 kb on - strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 500,787 + PGA1_c05070 0.89 +1.8 500,797 + PGA1_c05070 0.90 +1.2 500,797 + PGA1_c05070 0.90 +1.4 500,797 + PGA1_c05070 0.90 +2.2 500,805 - -2.4 500,813 + +1.0 500,831 - +2.2 500,831 - +0.6 500,834 + -0.5 500,880 + -0.7 500,888 - +0.8 500,910 + +0.2 500,958 - PGA1_c05080 0.11 +1.4 500,958 - PGA1_c05080 0.11 +1.0 500,973 - PGA1_c05080 0.15 +0.6 500,980 + PGA1_c05080 0.17 +0.6 500,981 + PGA1_c05080 0.17 +0.4 500,989 + PGA1_c05080 0.19 +0.1 500,995 - PGA1_c05080 0.20 +0.9 501,095 + PGA1_c05080 0.43 +0.7 501,100 + PGA1_c05080 0.44 +1.7 501,100 + PGA1_c05080 0.44 +0.5 501,111 + PGA1_c05080 0.47 +1.8 501,111 + PGA1_c05080 0.47 +0.2 501,111 + PGA1_c05080 0.47 +0.2 501,111 + PGA1_c05080 0.47 -0.1 501,111 + PGA1_c05080 0.47 +0.5 501,111 + PGA1_c05080 0.47 +1.4 501,111 + PGA1_c05080 0.47 +1.9 501,111 + PGA1_c05080 0.47 +1.0 501,119 - PGA1_c05080 0.49 +0.3 501,119 - PGA1_c05080 0.49 +1.4 501,119 - PGA1_c05080 0.49 +0.4 501,119 - PGA1_c05080 0.49 +1.1 501,119 - PGA1_c05080 0.49 +0.4 501,119 - PGA1_c05080 0.49 +0.8 501,119 - PGA1_c05080 0.49 +0.8 501,127 - PGA1_c05080 0.50 +1.0 501,145 + PGA1_c05080 0.54 +0.2 501,152 + PGA1_c05080 0.56 +0.9 501,152 - PGA1_c05080 0.56 +0.3 501,152 - PGA1_c05080 0.56 +1.0 501,153 - PGA1_c05080 0.56 -0.1 501,160 - PGA1_c05080 0.58 +2.6 501,162 - PGA1_c05080 0.58 +1.6 501,179 + PGA1_c05080 0.62 +1.2 501,203 + PGA1_c05080 0.68 +2.0 501,232 - PGA1_c05080 0.74 +0.4 501,259 - PGA1_c05080 0.81 +0.1 501,318 + +1.0 501,360 - +0.6 501,370 - +2.6 501,370 - +0.7 501,386 + +0.8 501,386 + +0.1 501,388 + -0.1 501,388 + -0.6 501,388 + +0.5 501,388 + +0.5 501,388 + +0.5 501,388 + +0.4 501,388 + +1.1 501,388 + +0.4 501,388 + +1.1 501,388 + +0.8 501,391 - +0.1 501,394 - +0.1 501,395 + +0.1 501,396 - +0.8 501,396 - +0.2 501,396 - +0.5 501,396 - +0.5 501,396 - +1.1 501,396 - +0.6 501,396 - +0.7 501,396 - -0.1 501,405 + -0.4 501,413 - +1.0 501,418 - +1.3 501,439 - +2.0 501,466 + +0.1 501,476 - +0.2 501,486 - +0.1 501,494 - -0.8 501,496 + -0.7 501,496 + -0.9 501,496 + -0.1 501,496 + -1.0 501,496 + +0.6 501,504 - +2.1 501,522 + +0.5 501,522 + -0.0 501,552 + -0.2 501,552 + -0.8 501,552 + +0.6 501,560 - +1.0 501,560 - +0.1 501,560 - +0.3 501,560 - -1.9 501,560 - +1.4 501,560 - -0.9 501,560 - -1.1 501,560 - -1.2 501,567 - -1.7 501,604 + -0.2 501,629 - +0.5 501,630 + +0.4 501,641 - +1.6 501,646 + -0.3 501,647 - -0.0 501,654 - +0.6 501,662 + -0.1 501,670 - -0.1 501,670 - +1.8 501,699 + +0.0 501,699 - +0.2 501,747 + -0.4 501,760 - -0.8 501,792 - +0.5 501,792 - +1.0 501,802 + +1.5 501,810 + +1.0 501,810 + +0.3 501,810 + +1.8 501,810 - +1.0 501,810 - +0.8 501,818 - +0.5 501,818 - +0.3 501,828 - +0.4 501,892 + PGA1_c05090 0.13 +0.4 501,899 + PGA1_c05090 0.14 +0.8 501,938 + PGA1_c05090 0.18 +0.6 501,945 + PGA1_c05090 0.19 +0.2 501,945 + PGA1_c05090 0.19 +0.8 501,945 + PGA1_c05090 0.19 -0.1 501,953 - PGA1_c05090 0.20 +1.3 501,963 - PGA1_c05090 0.21 +0.9 502,012 + PGA1_c05090 0.26 +3.0 502,064 - PGA1_c05090 0.31 +0.1 502,066 - PGA1_c05090 0.32 -0.4 502,068 + PGA1_c05090 0.32 -0.2 502,090 + PGA1_c05090 0.34 +1.1 502,090 + PGA1_c05090 0.34 +2.4 502,090 + PGA1_c05090 0.34 +1.5 502,090 + PGA1_c05090 0.34 +2.0 502,090 + PGA1_c05090 0.34 +1.7 502,098 - PGA1_c05090 0.35 +0.8 502,098 - PGA1_c05090 0.35 +1.2 502,127 - PGA1_c05090 0.38 +0.9 502,285 + PGA1_c05090 0.55 -0.9 502,285 + PGA1_c05090 0.55 +0.5 502,286 + PGA1_c05090 0.55 +2.7 502,291 + PGA1_c05090 0.55 +1.3 502,294 - PGA1_c05090 0.56 -1.9 502,294 - PGA1_c05090 0.56 +1.2 502,294 - PGA1_c05090 0.56 +1.3 502,357 + PGA1_c05090 0.62 +0.9 502,357 + PGA1_c05090 0.62 +0.6 502,357 + PGA1_c05090 0.62 +0.9 502,394 + PGA1_c05090 0.66 +2.4 502,399 + PGA1_c05090 0.67 -0.0 502,399 + PGA1_c05090 0.67 +0.6 502,399 + PGA1_c05090 0.67 +1.1 502,399 + PGA1_c05090 0.67 +0.9 502,399 + PGA1_c05090 0.67 +2.2 502,399 + PGA1_c05090 0.67 +0.4 502,399 + PGA1_c05090 0.67 +0.9 502,399 + PGA1_c05090 0.67 +2.2 502,399 + PGA1_c05090 0.67 +0.9 502,404 + PGA1_c05090 0.67 +1.4 502,404 + PGA1_c05090 0.67 +0.1 502,404 + PGA1_c05090 0.67 +1.2 502,407 - PGA1_c05090 0.68 +1.5 502,407 - PGA1_c05090 0.68 +1.3 502,407 - PGA1_c05090 0.68 +1.6 502,407 - PGA1_c05090 0.68 +0.5 502,407 - PGA1_c05090 0.68 +0.4 502,407 - PGA1_c05090 0.68 +0.6 502,407 - PGA1_c05090 0.68 +1.2 502,407 - PGA1_c05090 0.68 +2.9 502,407 - PGA1_c05090 0.68 +0.3 502,407 - PGA1_c05090 0.68 +1.4 502,407 - PGA1_c05090 0.68 +0.6 502,409 + PGA1_c05090 0.68 +1.2 502,409 + PGA1_c05090 0.68 +0.9 502,409 + PGA1_c05090 0.68 -0.3 502,409 + PGA1_c05090 0.68 -0.4 502,409 + PGA1_c05090 0.68 +0.8 502,409 + PGA1_c05090 0.68 +1.5 502,417 - PGA1_c05090 0.69 +1.6 502,417 - PGA1_c05090 0.69 +1.1 502,417 - PGA1_c05090 0.69 +0.6 502,417 - PGA1_c05090 0.69 +1.4 502,417 - PGA1_c05090 0.69 +0.2 502,417 - PGA1_c05090 0.69 +0.3 502,417 - PGA1_c05090 0.69 +1.1 502,417 - PGA1_c05090 0.69 +1.5 502,417 - PGA1_c05090 0.69 +1.2 502,417 - PGA1_c05090 0.69 +1.6 502,417 - PGA1_c05090 0.69 +0.6 502,643 + +1.3 502,651 - +1.8 502,651 - +0.6 502,660 + +1.1 502,660 + +0.7 502,697 + -0.4 502,722 - +0.1 502,745 - -1.2 502,751 + +1.0 502,751 - +1.2 502,759 - +0.1 502,759 - +1.0 502,783 + +0.3 502,808 - PGA1_c05100 0.10 -1.2 502,810 + PGA1_c05100 0.11 +0.2 502,825 - PGA1_c05100 0.13 +0.6 502,864 + PGA1_c05100 0.19 -0.8 502,872 - PGA1_c05100 0.20 -0.4 502,872 - PGA1_c05100 0.20 +0.4 502,890 - PGA1_c05100 0.23 -0.0 502,958 + PGA1_c05100 0.33 -0.0 503,016 + PGA1_c05100 0.42 +0.0 503,017 - PGA1_c05100 0.42 -0.5 503,019 - PGA1_c05100 0.42 +0.3 503,019 - PGA1_c05100 0.42 +0.8 503,053 - PGA1_c05100 0.47 -0.4 503,067 + PGA1_c05100 0.49 -1.5 503,096 - PGA1_c05100 0.54 +0.2 503,118 + PGA1_c05100 0.57 -0.9 503,118 + PGA1_c05100 0.57 +0.8 503,118 + PGA1_c05100 0.57 +0.3 503,177 + PGA1_c05100 0.66 -0.8 503,185 + PGA1_c05100 0.67 -0.3 503,193 + PGA1_c05100 0.68 -0.4 503,200 + PGA1_c05100 0.69 -0.4 503,321 + PGA1_c05100 0.88 +0.5 503,337 - +2.0 503,371 + +0.9 503,420 - +1.2 503,420 - -0.0 503,422 + +1.6 503,441 - +0.3 503,441 - +0.5 503,510 + -0.4 503,518 - +0.1 503,544 + +0.3 503,555 + -0.5 503,571 + -0.4 503,607 - +0.1 503,619 - +0.6 503,624 - +0.1 503,690 - PGA1_c05110 0.13 +0.5 503,692 + PGA1_c05110 0.13 +0.6 503,692 + PGA1_c05110 0.13 -0.9 503,692 + PGA1_c05110 0.13 +0.6 503,692 + PGA1_c05110 0.13 -0.9 503,700 - PGA1_c05110 0.14 +1.5 503,700 - PGA1_c05110 0.14 +0.5 503,700 - PGA1_c05110 0.14 -0.1
Or see this region's nucleotide sequence