Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04450 and PGA1_c04460 are separated by 276 nucleotides PGA1_c04460 and PGA1_c04470 are separated by 111 nucleotides PGA1_c04470 and PGA1_c04480 are separated by 120 nucleotides
PGA1_c04450: PGA1_c04450 - glutathione import ATP-binding protein GsiA, at 433,538 to 435,316
_c04450
PGA1_c04460: PGA1_c04460 - hypothetical protein, at 435,593 to 436,102
_c04460
PGA1_c04470: PGA1_c04470 - putative glutathione S-transferase, at 436,214 to 436,843
_c04470
PGA1_c04480: PGA1_c04480 - transcriptional regulator, TetR family, at 436,964 to 437,629
_c04480
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 434.665 kb on + strand, within PGA1_c04450 at 434.673 kb on - strand, within PGA1_c04450 at 434.673 kb on - strand, within PGA1_c04450 at 434.689 kb on - strand, within PGA1_c04450 at 434.745 kb on + strand, within PGA1_c04450 at 434.753 kb on - strand, within PGA1_c04450 at 434.753 kb on - strand, within PGA1_c04450 at 434.843 kb on - strand, within PGA1_c04450 at 434.843 kb on - strand, within PGA1_c04450 at 434.853 kb on - strand, within PGA1_c04450 at 434.896 kb on + strand, within PGA1_c04450 at 434.896 kb on - strand, within PGA1_c04450 at 434.906 kb on + strand, within PGA1_c04450 at 434.914 kb on - strand, within PGA1_c04450 at 434.952 kb on + strand, within PGA1_c04450 at 434.960 kb on - strand, within PGA1_c04450 at 434.994 kb on + strand, within PGA1_c04450 at 435.084 kb on - strand, within PGA1_c04450 at 435.126 kb on - strand, within PGA1_c04450 at 435.166 kb on - strand at 435.166 kb on - strand at 435.225 kb on - strand at 435.256 kb on + strand at 435.302 kb on + strand at 435.327 kb on + strand at 435.337 kb on + strand at 435.384 kb on + strand at 435.384 kb on + strand at 435.394 kb on + strand at 435.394 kb on + strand at 435.394 kb on + strand at 435.457 kb on + strand at 435.548 kb on + strand at 435.604 kb on + strand at 435.612 kb on - strand at 435.612 kb on - strand at 435.612 kb on - strand at 435.612 kb on - strand at 435.644 kb on - strand, within PGA1_c04460 at 435.724 kb on - strand, within PGA1_c04460 at 435.762 kb on - strand, within PGA1_c04460 at 435.798 kb on + strand, within PGA1_c04460 at 435.805 kb on + strand, within PGA1_c04460 at 435.811 kb on - strand, within PGA1_c04460 at 435.811 kb on - strand, within PGA1_c04460 at 435.811 kb on - strand, within PGA1_c04460 at 435.896 kb on + strand, within PGA1_c04460 at 435.897 kb on + strand, within PGA1_c04460 at 435.904 kb on - strand, within PGA1_c04460 at 435.904 kb on - strand, within PGA1_c04460 at 435.911 kb on + strand, within PGA1_c04460 at 435.911 kb on + strand, within PGA1_c04460 at 435.911 kb on + strand, within PGA1_c04460 at 435.911 kb on + strand, within PGA1_c04460 at 435.919 kb on - strand, within PGA1_c04460 at 435.965 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.008 kb on + strand, within PGA1_c04460 at 436.016 kb on - strand, within PGA1_c04460 at 436.016 kb on - strand, within PGA1_c04460 at 436.016 kb on - strand, within PGA1_c04460 at 436.054 kb on + strand at 436.062 kb on - strand at 436.097 kb on - strand at 436.105 kb on - strand at 436.163 kb on + strand at 436.168 kb on + strand at 436.176 kb on - strand at 436.176 kb on - strand at 436.178 kb on + strand at 436.185 kb on + strand at 436.187 kb on + strand at 436.187 kb on - strand at 436.198 kb on + strand at 436.198 kb on + strand at 436.198 kb on + strand at 436.198 kb on + strand at 436.198 kb on + strand at 436.228 kb on + strand at 436.236 kb on - strand at 436.236 kb on - strand at 436.280 kb on + strand, within PGA1_c04470 at 436.288 kb on - strand, within PGA1_c04470 at 436.317 kb on + strand, within PGA1_c04470 at 436.320 kb on - strand, within PGA1_c04470 at 436.355 kb on - strand, within PGA1_c04470 at 436.355 kb on - strand, within PGA1_c04470 at 436.355 kb on - strand, within PGA1_c04470 at 436.392 kb on + strand, within PGA1_c04470 at 436.408 kb on + strand, within PGA1_c04470 at 436.444 kb on + strand, within PGA1_c04470 at 436.444 kb on + strand, within PGA1_c04470 at 436.444 kb on - strand, within PGA1_c04470 at 436.452 kb on - strand, within PGA1_c04470 at 436.462 kb on - strand, within PGA1_c04470 at 436.472 kb on + strand, within PGA1_c04470 at 436.489 kb on + strand, within PGA1_c04470 at 436.490 kb on + strand, within PGA1_c04470 at 436.490 kb on + strand, within PGA1_c04470 at 436.498 kb on - strand, within PGA1_c04470 at 436.525 kb on - strand, within PGA1_c04470 at 436.565 kb on + strand, within PGA1_c04470 at 436.702 kb on + strand, within PGA1_c04470 at 436.706 kb on + strand, within PGA1_c04470 at 436.706 kb on + strand, within PGA1_c04470 at 436.706 kb on + strand, within PGA1_c04470 at 436.706 kb on + strand, within PGA1_c04470 at 436.706 kb on + strand, within PGA1_c04470 at 436.707 kb on + strand, within PGA1_c04470 at 436.707 kb on + strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.714 kb on - strand, within PGA1_c04470 at 436.715 kb on - strand, within PGA1_c04470 at 436.768 kb on - strand, within PGA1_c04470 at 436.775 kb on + strand, within PGA1_c04470 at 436.781 kb on - strand at 436.788 kb on + strand at 436.788 kb on - strand at 436.830 kb on + strand at 436.830 kb on + strand at 436.830 kb on + strand at 436.838 kb on - strand at 436.856 kb on + strand at 436.874 kb on + strand at 436.874 kb on + strand at 436.880 kb on - strand at 436.901 kb on + strand at 436.924 kb on + strand at 436.929 kb on + strand at 436.978 kb on - strand at 437.012 kb on - strand at 437.031 kb on - strand, within PGA1_c04480 at 437.090 kb on - strand, within PGA1_c04480 at 437.090 kb on - strand, within PGA1_c04480 at 437.090 kb on - strand, within PGA1_c04480 at 437.091 kb on - strand, within PGA1_c04480 at 437.092 kb on + strand, within PGA1_c04480 at 437.100 kb on - strand, within PGA1_c04480 at 437.100 kb on - strand, within PGA1_c04480 at 437.100 kb on - strand, within PGA1_c04480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 434,665 + PGA1_c04450 0.63 +1.3 434,673 - PGA1_c04450 0.64 +2.2 434,673 - PGA1_c04450 0.64 +4.8 434,689 - PGA1_c04450 0.65 +1.2 434,745 + PGA1_c04450 0.68 +1.4 434,753 - PGA1_c04450 0.68 +1.6 434,753 - PGA1_c04450 0.68 +2.2 434,843 - PGA1_c04450 0.73 +1.2 434,843 - PGA1_c04450 0.73 +2.1 434,853 - PGA1_c04450 0.74 +2.1 434,896 + PGA1_c04450 0.76 +2.2 434,896 - PGA1_c04450 0.76 +0.8 434,906 + PGA1_c04450 0.77 +1.9 434,914 - PGA1_c04450 0.77 +0.6 434,952 + PGA1_c04450 0.79 +1.7 434,960 - PGA1_c04450 0.80 +1.4 434,994 + PGA1_c04450 0.82 +1.0 435,084 - PGA1_c04450 0.87 +0.9 435,126 - PGA1_c04450 0.89 +2.0 435,166 - +1.2 435,166 - +1.9 435,225 - +2.5 435,256 + +1.4 435,302 + +1.2 435,327 + +2.9 435,337 + +1.6 435,384 + +1.3 435,384 + -0.7 435,394 + +0.2 435,394 + +0.9 435,394 + +1.5 435,457 + +0.5 435,548 + -0.1 435,604 + -0.1 435,612 - -0.7 435,612 - -1.1 435,612 - -0.2 435,612 - -2.2 435,644 - PGA1_c04460 0.10 -0.6 435,724 - PGA1_c04460 0.26 -0.3 435,762 - PGA1_c04460 0.33 -3.1 435,798 + PGA1_c04460 0.40 -0.9 435,805 + PGA1_c04460 0.42 -0.4 435,811 - PGA1_c04460 0.43 -1.5 435,811 - PGA1_c04460 0.43 -0.7 435,811 - PGA1_c04460 0.43 +0.2 435,896 + PGA1_c04460 0.59 -0.9 435,897 + PGA1_c04460 0.60 -0.9 435,904 - PGA1_c04460 0.61 -0.3 435,904 - PGA1_c04460 0.61 -0.1 435,911 + PGA1_c04460 0.62 -0.1 435,911 + PGA1_c04460 0.62 -1.4 435,911 + PGA1_c04460 0.62 +1.6 435,911 + PGA1_c04460 0.62 -0.9 435,919 - PGA1_c04460 0.64 -0.6 435,965 + PGA1_c04460 0.73 -3.4 436,008 + PGA1_c04460 0.81 -1.2 436,008 + PGA1_c04460 0.81 +0.4 436,008 + PGA1_c04460 0.81 +0.6 436,008 + PGA1_c04460 0.81 -0.1 436,008 + PGA1_c04460 0.81 -0.2 436,008 + PGA1_c04460 0.81 +0.6 436,008 + PGA1_c04460 0.81 +0.3 436,016 - PGA1_c04460 0.83 +0.5 436,016 - PGA1_c04460 0.83 +0.9 436,016 - PGA1_c04460 0.83 -0.6 436,054 + +1.8 436,062 - -0.3 436,097 - +0.9 436,105 - +0.0 436,163 + -1.6 436,168 + -1.5 436,176 - +0.2 436,176 - +1.5 436,178 + +1.0 436,185 + +0.2 436,187 + +0.2 436,187 - +0.2 436,198 + -2.3 436,198 + +0.5 436,198 + -0.1 436,198 + -2.4 436,198 + +0.5 436,228 + +0.6 436,236 - +0.6 436,236 - +0.5 436,280 + PGA1_c04470 0.10 +0.4 436,288 - PGA1_c04470 0.12 -0.4 436,317 + PGA1_c04470 0.16 +1.6 436,320 - PGA1_c04470 0.17 +0.1 436,355 - PGA1_c04470 0.22 -0.8 436,355 - PGA1_c04470 0.22 -0.8 436,355 - PGA1_c04470 0.22 +0.5 436,392 + PGA1_c04470 0.28 -0.3 436,408 + PGA1_c04470 0.31 +0.3 436,444 + PGA1_c04470 0.37 +0.2 436,444 + PGA1_c04470 0.37 +0.4 436,444 - PGA1_c04470 0.37 +1.1 436,452 - PGA1_c04470 0.38 +0.6 436,462 - PGA1_c04470 0.39 +0.3 436,472 + PGA1_c04470 0.41 +0.6 436,489 + PGA1_c04470 0.44 +0.2 436,490 + PGA1_c04470 0.44 -0.1 436,490 + PGA1_c04470 0.44 -0.2 436,498 - PGA1_c04470 0.45 +0.1 436,525 - PGA1_c04470 0.49 +1.2 436,565 + PGA1_c04470 0.56 +0.3 436,702 + PGA1_c04470 0.77 -0.4 436,706 + PGA1_c04470 0.78 -0.2 436,706 + PGA1_c04470 0.78 -0.4 436,706 + PGA1_c04470 0.78 +0.3 436,706 + PGA1_c04470 0.78 -0.1 436,706 + PGA1_c04470 0.78 -0.7 436,707 + PGA1_c04470 0.78 +0.2 436,707 + PGA1_c04470 0.78 +0.6 436,714 - PGA1_c04470 0.79 -1.4 436,714 - PGA1_c04470 0.79 +0.4 436,714 - PGA1_c04470 0.79 +2.1 436,714 - PGA1_c04470 0.79 +1.2 436,714 - PGA1_c04470 0.79 -0.1 436,714 - PGA1_c04470 0.79 -0.4 436,714 - PGA1_c04470 0.79 +0.7 436,714 - PGA1_c04470 0.79 -0.3 436,714 - PGA1_c04470 0.79 -0.4 436,714 - PGA1_c04470 0.79 -0.9 436,715 - PGA1_c04470 0.80 -0.4 436,768 - PGA1_c04470 0.88 -0.1 436,775 + PGA1_c04470 0.89 +0.1 436,781 - +1.6 436,788 + +0.8 436,788 - +0.6 436,830 + -1.4 436,830 + +0.8 436,830 + -2.2 436,838 - -1.2 436,856 + -0.7 436,874 + +0.8 436,874 + -0.3 436,880 - -0.7 436,901 + +0.1 436,924 + -1.4 436,929 + -0.0 436,978 - -0.4 437,012 - -0.4 437,031 - PGA1_c04480 0.10 +0.6 437,090 - PGA1_c04480 0.19 +1.4 437,090 - PGA1_c04480 0.19 -0.9 437,090 - PGA1_c04480 0.19 +0.2 437,091 - PGA1_c04480 0.19 +0.1 437,092 + PGA1_c04480 0.19 -0.2 437,100 - PGA1_c04480 0.20 -0.1 437,100 - PGA1_c04480 0.20 -0.7 437,100 - PGA1_c04480 0.20 -1.0
Or see this region's nucleotide sequence