Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04430

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04420 and PGA1_c04430 overlap by 4 nucleotidesPGA1_c04430 and PGA1_c04440 are separated by 12 nucleotides PGA1_c04420: PGA1_c04420 - putative glutathione transport system permease protein GsiD, at 429,410 to 430,564 _c04420 PGA1_c04430: PGA1_c04430 - putative peptide permease protein, at 430,561 to 431,589 _c04430 PGA1_c04440: PGA1_c04440 - putative extracellular solute-binding protein, at 431,602 to 433,545 _c04440 Position (kb) 430 431 432Strain fitness (log2 ratio) -1 0 1 2 3at 429.564 kb on - strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.609 kb on + strand, within PGA1_c04420at 429.727 kb on - strand, within PGA1_c04420at 429.734 kb on + strand, within PGA1_c04420at 429.742 kb on - strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.786 kb on + strand, within PGA1_c04420at 429.789 kb on - strand, within PGA1_c04420at 429.851 kb on + strand, within PGA1_c04420at 429.897 kb on + strand, within PGA1_c04420at 429.932 kb on - strand, within PGA1_c04420at 430.015 kb on + strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.021 kb on + strand, within PGA1_c04420at 430.055 kb on + strand, within PGA1_c04420at 430.070 kb on + strand, within PGA1_c04420at 430.091 kb on + strand, within PGA1_c04420at 430.099 kb on + strand, within PGA1_c04420at 430.121 kb on + strand, within PGA1_c04420at 430.126 kb on + strand, within PGA1_c04420at 430.134 kb on - strand, within PGA1_c04420at 430.246 kb on + strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.265 kb on + strand, within PGA1_c04420at 430.273 kb on - strand, within PGA1_c04420at 430.288 kb on - strand, within PGA1_c04420at 430.310 kb on + strand, within PGA1_c04420at 430.315 kb on - strand, within PGA1_c04420at 430.387 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.418 kb on + strand, within PGA1_c04420at 430.419 kb on + strand, within PGA1_c04420at 430.429 kb on + strand, within PGA1_c04420at 430.429 kb on + strand, within PGA1_c04420at 430.454 kb on + strandat 430.475 kb on + strandat 430.483 kb on - strandat 430.490 kb on - strandat 430.512 kb on - strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.628 kb on + strandat 430.636 kb on - strandat 430.701 kb on - strand, within PGA1_c04430at 430.713 kb on - strand, within PGA1_c04430at 430.718 kb on - strand, within PGA1_c04430at 430.737 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.750 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.847 kb on - strand, within PGA1_c04430at 430.941 kb on + strand, within PGA1_c04430at 430.963 kb on + strand, within PGA1_c04430at 430.963 kb on + strand, within PGA1_c04430at 431.016 kb on - strand, within PGA1_c04430at 431.029 kb on + strand, within PGA1_c04430at 431.037 kb on - strand, within PGA1_c04430at 431.088 kb on + strand, within PGA1_c04430at 431.096 kb on - strand, within PGA1_c04430at 431.120 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.128 kb on - strand, within PGA1_c04430at 431.129 kb on - strand, within PGA1_c04430at 431.129 kb on - strand, within PGA1_c04430at 431.139 kb on - strand, within PGA1_c04430at 431.140 kb on + strand, within PGA1_c04430at 431.156 kb on + strand, within PGA1_c04430at 431.164 kb on - strand, within PGA1_c04430at 431.202 kb on + strand, within PGA1_c04430at 431.239 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.282 kb on + strand, within PGA1_c04430at 431.290 kb on - strand, within PGA1_c04430at 431.290 kb on - strand, within PGA1_c04430at 431.314 kb on + strand, within PGA1_c04430at 431.317 kb on - strand, within PGA1_c04430at 431.322 kb on - strand, within PGA1_c04430at 431.337 kb on + strand, within PGA1_c04430at 431.348 kb on + strand, within PGA1_c04430at 431.355 kb on + strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.358 kb on - strand, within PGA1_c04430at 431.360 kb on + strand, within PGA1_c04430at 431.385 kb on - strand, within PGA1_c04430at 431.440 kb on + strand, within PGA1_c04430at 431.445 kb on + strand, within PGA1_c04430at 431.448 kb on - strand, within PGA1_c04430at 431.448 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.547 kb on + strandat 431.552 kb on + strandat 431.578 kb on - strandat 431.600 kb on + strandat 431.600 kb on + strandat 431.605 kb on + strandat 431.631 kb on + strandat 431.711 kb on - strandat 431.746 kb on + strandat 431.748 kb on + strandat 431.753 kb on + strandat 431.753 kb on + strandat 431.753 kb on + strandat 431.753 kb on + strandat 431.758 kb on + strandat 431.758 kb on + strandat 431.758 kb on + strandat 431.761 kb on - strandat 431.766 kb on - strandat 431.816 kb on + strand, within PGA1_c04440at 431.823 kb on - strand, within PGA1_c04440at 431.824 kb on - strand, within PGA1_c04440at 431.864 kb on + strand, within PGA1_c04440at 431.864 kb on + strand, within PGA1_c04440at 431.872 kb on + strand, within PGA1_c04440at 431.872 kb on + strand, within PGA1_c04440at 431.872 kb on - strand, within PGA1_c04440at 431.894 kb on + strand, within PGA1_c04440at 431.938 kb on + strand, within PGA1_c04440at 431.951 kb on + strand, within PGA1_c04440at 431.986 kb on - strand, within PGA1_c04440at 432.036 kb on + strand, within PGA1_c04440at 432.081 kb on + strand, within PGA1_c04440at 432.145 kb on + strand, within PGA1_c04440at 432.227 kb on - strand, within PGA1_c04440at 432.233 kb on - strand, within PGA1_c04440at 432.255 kb on + strand, within PGA1_c04440at 432.268 kb on - strand, within PGA1_c04440at 432.286 kb on - strand, within PGA1_c04440at 432.335 kb on + strand, within PGA1_c04440at 432.335 kb on + strand, within PGA1_c04440at 432.364 kb on + strand, within PGA1_c04440at 432.372 kb on - strand, within PGA1_c04440at 432.372 kb on - strand, within PGA1_c04440at 432.387 kb on - strand, within PGA1_c04440at 432.464 kb on - strand, within PGA1_c04440at 432.501 kb on + strand, within PGA1_c04440at 432.514 kb on - strand, within PGA1_c04440at 432.514 kb on - strand, within PGA1_c04440at 432.551 kb on - strand, within PGA1_c04440at 432.551 kb on - strand, within PGA1_c04440at 432.561 kb on + strand, within PGA1_c04440at 432.569 kb on - strand, within PGA1_c04440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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429,564 - PGA1_c04420 0.13 +1.6
429,583 + PGA1_c04420 0.15 +3.6
429,583 + PGA1_c04420 0.15 -0.1
429,583 + PGA1_c04420 0.15 +2.3
429,583 + PGA1_c04420 0.15 -0.5
429,583 + PGA1_c04420 0.15 +1.8
429,583 + PGA1_c04420 0.15 +2.0
429,583 + PGA1_c04420 0.15 +1.5
429,583 + PGA1_c04420 0.15 -0.9
429,583 + PGA1_c04420 0.15 +1.9
429,583 + PGA1_c04420 0.15 +1.2
429,591 - PGA1_c04420 0.16 +1.4
429,591 - PGA1_c04420 0.16 +2.7
429,591 - PGA1_c04420 0.16 -0.2
429,591 - PGA1_c04420 0.16 +2.0
429,591 - PGA1_c04420 0.16 +0.6
429,591 - PGA1_c04420 0.16 +0.8
429,591 - PGA1_c04420 0.16 +0.8
429,591 - PGA1_c04420 0.16 +1.0
429,591 - PGA1_c04420 0.16 +1.5
429,591 - PGA1_c04420 0.16 +1.6
429,591 - PGA1_c04420 0.16 +1.9
429,609 + PGA1_c04420 0.17 +2.3
429,727 - PGA1_c04420 0.27 -0.2
429,734 + PGA1_c04420 0.28 +1.7
429,742 - PGA1_c04420 0.29 +1.6
429,781 + PGA1_c04420 0.32 +2.0
429,781 + PGA1_c04420 0.32 +0.6
429,786 + PGA1_c04420 0.33 +2.5
429,789 - PGA1_c04420 0.33 +2.6
429,851 + PGA1_c04420 0.38 +3.5
429,897 + PGA1_c04420 0.42 +1.5
429,932 - PGA1_c04420 0.45 +1.7
430,015 + PGA1_c04420 0.52 +1.9
430,018 - PGA1_c04420 0.53 +2.2
430,018 - PGA1_c04420 0.53 +1.2
430,018 - PGA1_c04420 0.53 +1.1
430,021 + PGA1_c04420 0.53 +0.6
430,055 + PGA1_c04420 0.56 +2.1
430,070 + PGA1_c04420 0.57 +0.4
430,091 + PGA1_c04420 0.59 +0.6
430,099 + PGA1_c04420 0.60 +2.4
430,121 + PGA1_c04420 0.62 +0.1
430,126 + PGA1_c04420 0.62 +1.6
430,134 - PGA1_c04420 0.63 +2.0
430,246 + PGA1_c04420 0.72 +1.9
430,254 - PGA1_c04420 0.73 +2.5
430,254 - PGA1_c04420 0.73 +1.8
430,254 - PGA1_c04420 0.73 +1.2
430,254 - PGA1_c04420 0.73 +1.4
430,265 + PGA1_c04420 0.74 +1.3
430,273 - PGA1_c04420 0.75 +1.1
430,288 - PGA1_c04420 0.76 +1.6
430,310 + PGA1_c04420 0.78 -0.3
430,315 - PGA1_c04420 0.78 +1.1
430,387 + PGA1_c04420 0.85 +1.0
430,411 + PGA1_c04420 0.87 +2.1
430,411 + PGA1_c04420 0.87 +1.8
430,411 + PGA1_c04420 0.87 +1.5
430,418 + PGA1_c04420 0.87 +2.2
430,419 + PGA1_c04420 0.87 +3.4
430,429 + PGA1_c04420 0.88 +1.7
430,429 + PGA1_c04420 0.88 +3.2
430,454 + +1.1
430,475 + +1.2
430,483 - +0.2
430,490 - +1.8
430,512 - +2.2
430,575 + +1.8
430,575 + +1.5
430,575 + +0.1
430,575 + +1.8
430,583 - +0.1
430,583 - +0.8
430,583 - -0.5
430,583 - -0.5
430,628 + +1.2
430,636 - +1.0
430,701 - PGA1_c04430 0.14 +3.3
430,713 - PGA1_c04430 0.15 +2.6
430,718 - PGA1_c04430 0.15 +1.7
430,737 + PGA1_c04430 0.17 +0.9
430,747 + PGA1_c04430 0.18 +0.6
430,747 + PGA1_c04430 0.18 +1.4
430,747 + PGA1_c04430 0.18 +1.5
430,750 - PGA1_c04430 0.18 +1.6
430,755 - PGA1_c04430 0.19 +1.4
430,755 - PGA1_c04430 0.19 +3.0
430,755 - PGA1_c04430 0.19 +0.6
430,755 - PGA1_c04430 0.19 +1.5
430,755 - PGA1_c04430 0.19 +1.6
430,847 - PGA1_c04430 0.28 +1.6
430,941 + PGA1_c04430 0.37 +1.2
430,963 + PGA1_c04430 0.39 +2.4
430,963 + PGA1_c04430 0.39 +0.1
431,016 - PGA1_c04430 0.44 +1.6
431,029 + PGA1_c04430 0.45 +1.4
431,037 - PGA1_c04430 0.46 +2.5
431,088 + PGA1_c04430 0.51 +1.5
431,096 - PGA1_c04430 0.52 +0.8
431,120 + PGA1_c04430 0.54 +1.5
431,121 + PGA1_c04430 0.54 +1.4
431,121 + PGA1_c04430 0.54 +0.6
431,121 + PGA1_c04430 0.54 +0.2
431,128 - PGA1_c04430 0.55 -0.1
431,129 - PGA1_c04430 0.55 +1.9
431,129 - PGA1_c04430 0.55 +1.1
431,139 - PGA1_c04430 0.56 +2.0
431,140 + PGA1_c04430 0.56 +1.6
431,156 + PGA1_c04430 0.58 +0.5
431,164 - PGA1_c04430 0.59 +1.9
431,202 + PGA1_c04430 0.62 +2.0
431,239 - PGA1_c04430 0.66 +2.6
431,244 - PGA1_c04430 0.66 +2.6
431,244 - PGA1_c04430 0.66 +1.2
431,244 - PGA1_c04430 0.66 +0.4
431,282 + PGA1_c04430 0.70 +1.3
431,290 - PGA1_c04430 0.71 +1.0
431,290 - PGA1_c04430 0.71 +2.4
431,314 + PGA1_c04430 0.73 +0.6
431,317 - PGA1_c04430 0.73 +1.0
431,322 - PGA1_c04430 0.74 +1.6
431,337 + PGA1_c04430 0.75 +0.5
431,348 + PGA1_c04430 0.76 +1.8
431,355 + PGA1_c04430 0.77 +1.6
431,356 - PGA1_c04430 0.77 +0.6
431,356 - PGA1_c04430 0.77 +0.1
431,356 - PGA1_c04430 0.77 +2.2
431,358 - PGA1_c04430 0.77 +1.5
431,360 + PGA1_c04430 0.78 +0.5
431,385 - PGA1_c04430 0.80 +1.4
431,440 + PGA1_c04430 0.85 +2.0
431,445 + PGA1_c04430 0.86 +1.5
431,448 - PGA1_c04430 0.86 +1.5
431,448 - PGA1_c04430 0.86 +1.3
431,453 - PGA1_c04430 0.87 +1.2
431,453 - PGA1_c04430 0.87 +1.5
431,453 - PGA1_c04430 0.87 +3.1
431,453 - PGA1_c04430 0.87 +1.6
431,453 - PGA1_c04430 0.87 +2.3
431,453 - PGA1_c04430 0.87 +0.4
431,453 - PGA1_c04430 0.87 +1.2
431,547 + +2.7
431,552 + +2.2
431,578 - +1.2
431,600 + -0.0
431,600 + +0.1
431,605 + +1.5
431,631 + +0.8
431,711 - +1.5
431,746 + +1.9
431,748 + +1.5
431,753 + +1.6
431,753 + +1.7
431,753 + +0.6
431,753 + -0.2
431,758 + +2.3
431,758 + +2.8
431,758 + +1.5
431,761 - +1.5
431,766 - +2.3
431,816 + PGA1_c04440 0.11 +2.0
431,823 - PGA1_c04440 0.11 +1.2
431,824 - PGA1_c04440 0.11 +1.0
431,864 + PGA1_c04440 0.13 +2.1
431,864 + PGA1_c04440 0.13 +0.9
431,872 + PGA1_c04440 0.14 +0.9
431,872 + PGA1_c04440 0.14 +2.5
431,872 - PGA1_c04440 0.14 +0.9
431,894 + PGA1_c04440 0.15 +1.8
431,938 + PGA1_c04440 0.17 +1.6
431,951 + PGA1_c04440 0.18 +0.1
431,986 - PGA1_c04440 0.20 +1.8
432,036 + PGA1_c04440 0.22 +3.7
432,081 + PGA1_c04440 0.25 +0.9
432,145 + PGA1_c04440 0.28 +0.9
432,227 - PGA1_c04440 0.32 +1.7
432,233 - PGA1_c04440 0.32 +1.3
432,255 + PGA1_c04440 0.34 +2.1
432,268 - PGA1_c04440 0.34 +0.9
432,286 - PGA1_c04440 0.35 +2.4
432,335 + PGA1_c04440 0.38 +1.6
432,335 + PGA1_c04440 0.38 +1.6
432,364 + PGA1_c04440 0.39 +1.6
432,372 - PGA1_c04440 0.40 +1.6
432,372 - PGA1_c04440 0.40 +1.3
432,387 - PGA1_c04440 0.40 +1.9
432,464 - PGA1_c04440 0.44 +1.0
432,501 + PGA1_c04440 0.46 +1.2
432,514 - PGA1_c04440 0.47 +1.6
432,514 - PGA1_c04440 0.47 +1.5
432,551 - PGA1_c04440 0.49 -0.1
432,551 - PGA1_c04440 0.49 +1.8
432,561 + PGA1_c04440 0.49 +2.0
432,569 - PGA1_c04440 0.50 +2.1

Or see this region's nucleotide sequence