Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04410 and PGA1_c04420 are separated by 37 nucleotides PGA1_c04420 and PGA1_c04430 overlap by 4 nucleotides
PGA1_c04410: PGA1_c04410 - Predicted acyl-CoA transferases/carnitine dehydratase, at 427,996 to 429,372
_c04410
PGA1_c04420: PGA1_c04420 - putative glutathione transport system permease protein GsiD, at 429,410 to 430,564
_c04420
PGA1_c04430: PGA1_c04430 - putative peptide permease protein, at 430,561 to 431,589
_c04430
Position (kb) 429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 428.427 kb on + strand, within PGA1_c04410 at 428.430 kb on - strand, within PGA1_c04410 at 428.445 kb on - strand, within PGA1_c04410 at 428.472 kb on + strand, within PGA1_c04410 at 428.516 kb on - strand, within PGA1_c04410 at 428.523 kb on + strand, within PGA1_c04410 at 428.570 kb on - strand, within PGA1_c04410 at 428.611 kb on - strand, within PGA1_c04410 at 428.611 kb on - strand, within PGA1_c04410 at 428.613 kb on + strand, within PGA1_c04410 at 428.613 kb on + strand, within PGA1_c04410 at 428.620 kb on + strand, within PGA1_c04410 at 428.620 kb on + strand, within PGA1_c04410 at 428.622 kb on + strand, within PGA1_c04410 at 428.628 kb on - strand, within PGA1_c04410 at 428.628 kb on - strand, within PGA1_c04410 at 428.630 kb on - strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.638 kb on - strand, within PGA1_c04410 at 428.645 kb on - strand, within PGA1_c04410 at 428.682 kb on + strand, within PGA1_c04410 at 428.750 kb on - strand, within PGA1_c04410 at 428.776 kb on + strand, within PGA1_c04410 at 428.798 kb on - strand, within PGA1_c04410 at 428.855 kb on + strand, within PGA1_c04410 at 428.891 kb on + strand, within PGA1_c04410 at 428.891 kb on + strand, within PGA1_c04410 at 428.899 kb on - strand, within PGA1_c04410 at 428.899 kb on - strand, within PGA1_c04410 at 428.929 kb on + strand, within PGA1_c04410 at 428.932 kb on + strand, within PGA1_c04410 at 429.000 kb on - strand, within PGA1_c04410 at 429.021 kb on + strand, within PGA1_c04410 at 429.026 kb on + strand, within PGA1_c04410 at 429.094 kb on + strand, within PGA1_c04410 at 429.112 kb on - strand, within PGA1_c04410 at 429.128 kb on + strand, within PGA1_c04410 at 429.151 kb on + strand, within PGA1_c04410 at 429.159 kb on - strand, within PGA1_c04410 at 429.159 kb on - strand, within PGA1_c04410 at 429.193 kb on + strand, within PGA1_c04410 at 429.193 kb on + strand, within PGA1_c04410 at 429.193 kb on + strand, within PGA1_c04410 at 429.198 kb on + strand, within PGA1_c04410 at 429.198 kb on + strand, within PGA1_c04410 at 429.198 kb on + strand, within PGA1_c04410 at 429.201 kb on - strand, within PGA1_c04410 at 429.206 kb on - strand, within PGA1_c04410 at 429.206 kb on - strand, within PGA1_c04410 at 429.206 kb on - strand, within PGA1_c04410 at 429.239 kb on - strand at 429.247 kb on - strand at 429.260 kb on - strand at 429.271 kb on - strand at 429.295 kb on + strand at 429.354 kb on - strand at 429.424 kb on + strand at 429.424 kb on + strand at 429.450 kb on - strand at 429.499 kb on - strand at 429.523 kb on - strand at 429.556 kb on + strand, within PGA1_c04420 at 429.564 kb on - strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.583 kb on + strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.591 kb on - strand, within PGA1_c04420 at 429.609 kb on + strand, within PGA1_c04420 at 429.727 kb on - strand, within PGA1_c04420 at 429.734 kb on + strand, within PGA1_c04420 at 429.742 kb on - strand, within PGA1_c04420 at 429.781 kb on + strand, within PGA1_c04420 at 429.781 kb on + strand, within PGA1_c04420 at 429.786 kb on + strand, within PGA1_c04420 at 429.789 kb on - strand, within PGA1_c04420 at 429.851 kb on + strand, within PGA1_c04420 at 429.897 kb on + strand, within PGA1_c04420 at 429.932 kb on - strand, within PGA1_c04420 at 430.015 kb on + strand, within PGA1_c04420 at 430.018 kb on - strand, within PGA1_c04420 at 430.018 kb on - strand, within PGA1_c04420 at 430.018 kb on - strand, within PGA1_c04420 at 430.021 kb on + strand, within PGA1_c04420 at 430.055 kb on + strand, within PGA1_c04420 at 430.070 kb on + strand, within PGA1_c04420 at 430.091 kb on + strand, within PGA1_c04420 at 430.099 kb on + strand, within PGA1_c04420 at 430.121 kb on + strand, within PGA1_c04420 at 430.126 kb on + strand, within PGA1_c04420 at 430.134 kb on - strand, within PGA1_c04420 at 430.246 kb on + strand, within PGA1_c04420 at 430.254 kb on - strand, within PGA1_c04420 at 430.254 kb on - strand, within PGA1_c04420 at 430.254 kb on - strand, within PGA1_c04420 at 430.254 kb on - strand, within PGA1_c04420 at 430.265 kb on + strand, within PGA1_c04420 at 430.273 kb on - strand, within PGA1_c04420 at 430.288 kb on - strand, within PGA1_c04420 at 430.310 kb on + strand, within PGA1_c04420 at 430.315 kb on - strand, within PGA1_c04420 at 430.387 kb on + strand, within PGA1_c04420 at 430.411 kb on + strand, within PGA1_c04420 at 430.411 kb on + strand, within PGA1_c04420 at 430.411 kb on + strand, within PGA1_c04420 at 430.418 kb on + strand, within PGA1_c04420 at 430.419 kb on + strand, within PGA1_c04420 at 430.429 kb on + strand, within PGA1_c04420 at 430.429 kb on + strand, within PGA1_c04420 at 430.454 kb on + strand at 430.475 kb on + strand at 430.483 kb on - strand at 430.490 kb on - strand at 430.512 kb on - strand at 430.575 kb on + strand at 430.575 kb on + strand at 430.575 kb on + strand at 430.575 kb on + strand at 430.583 kb on - strand at 430.583 kb on - strand at 430.583 kb on - strand at 430.583 kb on - strand at 430.628 kb on + strand at 430.636 kb on - strand at 430.701 kb on - strand, within PGA1_c04430 at 430.713 kb on - strand, within PGA1_c04430 at 430.718 kb on - strand, within PGA1_c04430 at 430.737 kb on + strand, within PGA1_c04430 at 430.747 kb on + strand, within PGA1_c04430 at 430.747 kb on + strand, within PGA1_c04430 at 430.747 kb on + strand, within PGA1_c04430 at 430.750 kb on - strand, within PGA1_c04430 at 430.755 kb on - strand, within PGA1_c04430 at 430.755 kb on - strand, within PGA1_c04430 at 430.755 kb on - strand, within PGA1_c04430 at 430.755 kb on - strand, within PGA1_c04430 at 430.755 kb on - strand, within PGA1_c04430 at 430.847 kb on - strand, within PGA1_c04430 at 430.941 kb on + strand, within PGA1_c04430 at 430.963 kb on + strand, within PGA1_c04430 at 430.963 kb on + strand, within PGA1_c04430 at 431.016 kb on - strand, within PGA1_c04430 at 431.029 kb on + strand, within PGA1_c04430 at 431.037 kb on - strand, within PGA1_c04430 at 431.088 kb on + strand, within PGA1_c04430 at 431.096 kb on - strand, within PGA1_c04430 at 431.120 kb on + strand, within PGA1_c04430 at 431.121 kb on + strand, within PGA1_c04430 at 431.121 kb on + strand, within PGA1_c04430 at 431.121 kb on + strand, within PGA1_c04430 at 431.128 kb on - strand, within PGA1_c04430 at 431.129 kb on - strand, within PGA1_c04430 at 431.129 kb on - strand, within PGA1_c04430 at 431.139 kb on - strand, within PGA1_c04430 at 431.140 kb on + strand, within PGA1_c04430 at 431.156 kb on + strand, within PGA1_c04430 at 431.164 kb on - strand, within PGA1_c04430 at 431.202 kb on + strand, within PGA1_c04430 at 431.239 kb on - strand, within PGA1_c04430 at 431.244 kb on - strand, within PGA1_c04430 at 431.244 kb on - strand, within PGA1_c04430 at 431.244 kb on - strand, within PGA1_c04430 at 431.282 kb on + strand, within PGA1_c04430 at 431.290 kb on - strand, within PGA1_c04430 at 431.290 kb on - strand, within PGA1_c04430 at 431.314 kb on + strand, within PGA1_c04430 at 431.317 kb on - strand, within PGA1_c04430 at 431.322 kb on - strand, within PGA1_c04430 at 431.337 kb on + strand, within PGA1_c04430 at 431.348 kb on + strand, within PGA1_c04430 at 431.355 kb on + strand, within PGA1_c04430 at 431.356 kb on - strand, within PGA1_c04430 at 431.356 kb on - strand, within PGA1_c04430 at 431.356 kb on - strand, within PGA1_c04430 at 431.358 kb on - strand, within PGA1_c04430 at 431.360 kb on + strand, within PGA1_c04430 at 431.385 kb on - strand, within PGA1_c04430 at 431.440 kb on + strand, within PGA1_c04430 at 431.445 kb on + strand, within PGA1_c04430 at 431.448 kb on - strand, within PGA1_c04430 at 431.448 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.453 kb on - strand, within PGA1_c04430 at 431.547 kb on + strand at 431.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 428,427 + PGA1_c04410 0.31 +0.5 428,430 - PGA1_c04410 0.32 -1.7 428,445 - PGA1_c04410 0.33 +0.3 428,472 + PGA1_c04410 0.35 -0.2 428,516 - PGA1_c04410 0.38 -0.5 428,523 + PGA1_c04410 0.38 -0.1 428,570 - PGA1_c04410 0.42 +0.3 428,611 - PGA1_c04410 0.45 -1.1 428,611 - PGA1_c04410 0.45 -0.8 428,613 + PGA1_c04410 0.45 +0.4 428,613 + PGA1_c04410 0.45 -1.3 428,620 + PGA1_c04410 0.45 -0.4 428,620 + PGA1_c04410 0.45 -0.5 428,622 + PGA1_c04410 0.45 -0.2 428,628 - PGA1_c04410 0.46 -1.6 428,628 - PGA1_c04410 0.46 -0.0 428,630 - PGA1_c04410 0.46 -0.2 428,637 + PGA1_c04410 0.47 -0.9 428,637 + PGA1_c04410 0.47 +1.3 428,637 + PGA1_c04410 0.47 -0.2 428,638 - PGA1_c04410 0.47 -0.9 428,645 - PGA1_c04410 0.47 -0.6 428,682 + PGA1_c04410 0.50 -0.5 428,750 - PGA1_c04410 0.55 -1.4 428,776 + PGA1_c04410 0.57 +0.1 428,798 - PGA1_c04410 0.58 -0.7 428,855 + PGA1_c04410 0.62 -0.9 428,891 + PGA1_c04410 0.65 -1.1 428,891 + PGA1_c04410 0.65 +1.6 428,899 - PGA1_c04410 0.66 -0.6 428,899 - PGA1_c04410 0.66 -0.4 428,929 + PGA1_c04410 0.68 +1.2 428,932 + PGA1_c04410 0.68 +0.1 429,000 - PGA1_c04410 0.73 +0.6 429,021 + PGA1_c04410 0.74 -0.4 429,026 + PGA1_c04410 0.75 +0.6 429,094 + PGA1_c04410 0.80 -1.7 429,112 - PGA1_c04410 0.81 -0.0 429,128 + PGA1_c04410 0.82 -0.4 429,151 + PGA1_c04410 0.84 +1.1 429,159 - PGA1_c04410 0.84 +1.6 429,159 - PGA1_c04410 0.84 -0.1 429,193 + PGA1_c04410 0.87 -0.1 429,193 + PGA1_c04410 0.87 +1.1 429,193 + PGA1_c04410 0.87 -0.7 429,198 + PGA1_c04410 0.87 +1.0 429,198 + PGA1_c04410 0.87 -1.4 429,198 + PGA1_c04410 0.87 -0.4 429,201 - PGA1_c04410 0.88 +0.1 429,206 - PGA1_c04410 0.88 -0.4 429,206 - PGA1_c04410 0.88 +0.2 429,206 - PGA1_c04410 0.88 -0.1 429,239 - +0.8 429,247 - -0.1 429,260 - +0.2 429,271 - -1.2 429,295 + -2.8 429,354 - -0.2 429,424 + -1.4 429,424 + -0.9 429,450 - +1.6 429,499 - +1.2 429,523 - +0.6 429,556 + PGA1_c04420 0.13 +1.2 429,564 - PGA1_c04420 0.13 +1.6 429,583 + PGA1_c04420 0.15 +3.6 429,583 + PGA1_c04420 0.15 -0.1 429,583 + PGA1_c04420 0.15 +2.3 429,583 + PGA1_c04420 0.15 -0.5 429,583 + PGA1_c04420 0.15 +1.8 429,583 + PGA1_c04420 0.15 +2.0 429,583 + PGA1_c04420 0.15 +1.5 429,583 + PGA1_c04420 0.15 -0.9 429,583 + PGA1_c04420 0.15 +1.9 429,583 + PGA1_c04420 0.15 +1.2 429,591 - PGA1_c04420 0.16 +1.4 429,591 - PGA1_c04420 0.16 +2.7 429,591 - PGA1_c04420 0.16 -0.2 429,591 - PGA1_c04420 0.16 +2.0 429,591 - PGA1_c04420 0.16 +0.6 429,591 - PGA1_c04420 0.16 +0.8 429,591 - PGA1_c04420 0.16 +0.8 429,591 - PGA1_c04420 0.16 +1.0 429,591 - PGA1_c04420 0.16 +1.5 429,591 - PGA1_c04420 0.16 +1.6 429,591 - PGA1_c04420 0.16 +1.9 429,609 + PGA1_c04420 0.17 +2.3 429,727 - PGA1_c04420 0.27 -0.2 429,734 + PGA1_c04420 0.28 +1.7 429,742 - PGA1_c04420 0.29 +1.6 429,781 + PGA1_c04420 0.32 +2.0 429,781 + PGA1_c04420 0.32 +0.6 429,786 + PGA1_c04420 0.33 +2.5 429,789 - PGA1_c04420 0.33 +2.6 429,851 + PGA1_c04420 0.38 +3.5 429,897 + PGA1_c04420 0.42 +1.5 429,932 - PGA1_c04420 0.45 +1.7 430,015 + PGA1_c04420 0.52 +1.9 430,018 - PGA1_c04420 0.53 +2.2 430,018 - PGA1_c04420 0.53 +1.2 430,018 - PGA1_c04420 0.53 +1.1 430,021 + PGA1_c04420 0.53 +0.6 430,055 + PGA1_c04420 0.56 +2.1 430,070 + PGA1_c04420 0.57 +0.4 430,091 + PGA1_c04420 0.59 +0.6 430,099 + PGA1_c04420 0.60 +2.4 430,121 + PGA1_c04420 0.62 +0.1 430,126 + PGA1_c04420 0.62 +1.6 430,134 - PGA1_c04420 0.63 +2.0 430,246 + PGA1_c04420 0.72 +1.9 430,254 - PGA1_c04420 0.73 +2.5 430,254 - PGA1_c04420 0.73 +1.8 430,254 - PGA1_c04420 0.73 +1.2 430,254 - PGA1_c04420 0.73 +1.4 430,265 + PGA1_c04420 0.74 +1.3 430,273 - PGA1_c04420 0.75 +1.1 430,288 - PGA1_c04420 0.76 +1.6 430,310 + PGA1_c04420 0.78 -0.3 430,315 - PGA1_c04420 0.78 +1.1 430,387 + PGA1_c04420 0.85 +1.0 430,411 + PGA1_c04420 0.87 +2.1 430,411 + PGA1_c04420 0.87 +1.8 430,411 + PGA1_c04420 0.87 +1.5 430,418 + PGA1_c04420 0.87 +2.2 430,419 + PGA1_c04420 0.87 +3.4 430,429 + PGA1_c04420 0.88 +1.7 430,429 + PGA1_c04420 0.88 +3.2 430,454 + +1.1 430,475 + +1.2 430,483 - +0.2 430,490 - +1.8 430,512 - +2.2 430,575 + +1.8 430,575 + +1.5 430,575 + +0.1 430,575 + +1.8 430,583 - +0.1 430,583 - +0.8 430,583 - -0.5 430,583 - -0.5 430,628 + +1.2 430,636 - +1.0 430,701 - PGA1_c04430 0.14 +3.3 430,713 - PGA1_c04430 0.15 +2.6 430,718 - PGA1_c04430 0.15 +1.7 430,737 + PGA1_c04430 0.17 +0.9 430,747 + PGA1_c04430 0.18 +0.6 430,747 + PGA1_c04430 0.18 +1.4 430,747 + PGA1_c04430 0.18 +1.5 430,750 - PGA1_c04430 0.18 +1.6 430,755 - PGA1_c04430 0.19 +1.4 430,755 - PGA1_c04430 0.19 +3.0 430,755 - PGA1_c04430 0.19 +0.6 430,755 - PGA1_c04430 0.19 +1.5 430,755 - PGA1_c04430 0.19 +1.6 430,847 - PGA1_c04430 0.28 +1.6 430,941 + PGA1_c04430 0.37 +1.2 430,963 + PGA1_c04430 0.39 +2.4 430,963 + PGA1_c04430 0.39 +0.1 431,016 - PGA1_c04430 0.44 +1.6 431,029 + PGA1_c04430 0.45 +1.4 431,037 - PGA1_c04430 0.46 +2.5 431,088 + PGA1_c04430 0.51 +1.5 431,096 - PGA1_c04430 0.52 +0.8 431,120 + PGA1_c04430 0.54 +1.5 431,121 + PGA1_c04430 0.54 +1.4 431,121 + PGA1_c04430 0.54 +0.6 431,121 + PGA1_c04430 0.54 +0.2 431,128 - PGA1_c04430 0.55 -0.1 431,129 - PGA1_c04430 0.55 +1.9 431,129 - PGA1_c04430 0.55 +1.1 431,139 - PGA1_c04430 0.56 +2.0 431,140 + PGA1_c04430 0.56 +1.6 431,156 + PGA1_c04430 0.58 +0.5 431,164 - PGA1_c04430 0.59 +1.9 431,202 + PGA1_c04430 0.62 +2.0 431,239 - PGA1_c04430 0.66 +2.6 431,244 - PGA1_c04430 0.66 +2.6 431,244 - PGA1_c04430 0.66 +1.2 431,244 - PGA1_c04430 0.66 +0.4 431,282 + PGA1_c04430 0.70 +1.3 431,290 - PGA1_c04430 0.71 +1.0 431,290 - PGA1_c04430 0.71 +2.4 431,314 + PGA1_c04430 0.73 +0.6 431,317 - PGA1_c04430 0.73 +1.0 431,322 - PGA1_c04430 0.74 +1.6 431,337 + PGA1_c04430 0.75 +0.5 431,348 + PGA1_c04430 0.76 +1.8 431,355 + PGA1_c04430 0.77 +1.6 431,356 - PGA1_c04430 0.77 +0.6 431,356 - PGA1_c04430 0.77 +0.1 431,356 - PGA1_c04430 0.77 +2.2 431,358 - PGA1_c04430 0.77 +1.5 431,360 + PGA1_c04430 0.78 +0.5 431,385 - PGA1_c04430 0.80 +1.4 431,440 + PGA1_c04430 0.85 +2.0 431,445 + PGA1_c04430 0.86 +1.5 431,448 - PGA1_c04430 0.86 +1.5 431,448 - PGA1_c04430 0.86 +1.3 431,453 - PGA1_c04430 0.87 +1.2 431,453 - PGA1_c04430 0.87 +1.5 431,453 - PGA1_c04430 0.87 +3.1 431,453 - PGA1_c04430 0.87 +1.6 431,453 - PGA1_c04430 0.87 +2.3 431,453 - PGA1_c04430 0.87 +0.4 431,453 - PGA1_c04430 0.87 +1.2 431,547 + +2.7 431,552 + +2.2
Or see this region's nucleotide sequence