Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04330 and PGA1_c04340 are separated by 0 nucleotides PGA1_c04340 and PGA1_c04350 overlap by 4 nucleotides PGA1_c04350 and PGA1_c04360 overlap by 4 nucleotides PGA1_c04360 and PGA1_c04370 overlap by 4 nucleotides
PGA1_c04330: PGA1_c04330 - hypothetical protein, at 418,663 to 419,142
_c04330
PGA1_c04340: PGA1_c04340 - hypothetical protein, at 419,143 to 419,901
_c04340
PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040
_c04350
PGA1_c04360: PGA1_c04360 - putative phosphoglycerate mutase family protein, at 421,037 to 421,627
_c04360
PGA1_c04370: PGA1_c04370 - putative glycosyltransferase protein, at 421,624 to 422,658
_c04370
Position (kb) 419
420
421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 418.911 kb on - strand, within PGA1_c04330 at 418.948 kb on - strand, within PGA1_c04330 at 419.007 kb on + strand, within PGA1_c04330 at 419.010 kb on + strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.061 kb on + strand, within PGA1_c04330 at 419.070 kb on - strand, within PGA1_c04330 at 419.081 kb on + strand, within PGA1_c04330 at 419.089 kb on - strand, within PGA1_c04330 at 419.116 kb on - strand at 419.176 kb on + strand at 419.176 kb on + strand at 419.188 kb on - strand at 419.244 kb on + strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.453 kb on + strand, within PGA1_c04340 at 419.490 kb on + strand, within PGA1_c04340 at 419.524 kb on - strand, within PGA1_c04340 at 419.557 kb on + strand, within PGA1_c04340 at 419.631 kb on - strand, within PGA1_c04340 at 419.839 kb on + strand at 419.883 kb on - strand at 419.883 kb on - strand at 419.892 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.930 kb on + strand at 420.000 kb on + strand at 420.008 kb on - strand at 420.068 kb on + strand, within PGA1_c04350 at 420.068 kb on + strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.156 kb on + strand, within PGA1_c04350 at 420.237 kb on + strand, within PGA1_c04350 at 420.259 kb on - strand, within PGA1_c04350 at 420.261 kb on - strand, within PGA1_c04350 at 420.276 kb on - strand, within PGA1_c04350 at 420.324 kb on + strand, within PGA1_c04350 at 420.378 kb on + strand, within PGA1_c04350 at 420.435 kb on - strand, within PGA1_c04350 at 420.558 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.678 kb on + strand, within PGA1_c04350 at 420.701 kb on + strand, within PGA1_c04350 at 420.701 kb on + strand, within PGA1_c04350 at 420.701 kb on + strand, within PGA1_c04350 at 420.719 kb on - strand, within PGA1_c04350 at 420.746 kb on - strand, within PGA1_c04350 at 420.775 kb on - strand, within PGA1_c04350 at 420.775 kb on - strand, within PGA1_c04350 at 420.780 kb on - strand, within PGA1_c04350 at 420.780 kb on - strand, within PGA1_c04350 at 420.782 kb on + strand, within PGA1_c04350 at 420.804 kb on + strand, within PGA1_c04350 at 420.812 kb on - strand, within PGA1_c04350 at 420.895 kb on - strand, within PGA1_c04350 at 420.902 kb on + strand, within PGA1_c04350 at 420.910 kb on - strand, within PGA1_c04350 at 420.910 kb on - strand, within PGA1_c04350 at 420.910 kb on - strand, within PGA1_c04350 at 420.922 kb on - strand, within PGA1_c04350 at 420.940 kb on - strand at 420.977 kb on + strand at 420.990 kb on + strand at 420.993 kb on + strand at 420.998 kb on + strand at 420.998 kb on + strand at 421.003 kb on + strand at 421.144 kb on + strand, within PGA1_c04360 at 421.215 kb on + strand, within PGA1_c04360 at 421.243 kb on + strand, within PGA1_c04360 at 421.297 kb on - strand, within PGA1_c04360 at 421.313 kb on + strand, within PGA1_c04360 at 421.321 kb on - strand, within PGA1_c04360 at 421.355 kb on - strand, within PGA1_c04360 at 421.355 kb on - strand, within PGA1_c04360 at 421.362 kb on - strand, within PGA1_c04360 at 421.372 kb on + strand, within PGA1_c04360 at 421.377 kb on - strand, within PGA1_c04360 at 421.377 kb on - strand, within PGA1_c04360 at 421.380 kb on - strand, within PGA1_c04360 at 421.391 kb on - strand, within PGA1_c04360 at 421.468 kb on + strand, within PGA1_c04360 at 421.476 kb on - strand, within PGA1_c04360 at 421.480 kb on - strand, within PGA1_c04360 at 421.503 kb on + strand, within PGA1_c04360 at 421.534 kb on - strand, within PGA1_c04360 at 421.536 kb on + strand, within PGA1_c04360 at 421.591 kb on - strand at 421.604 kb on + strand at 421.645 kb on + strand at 421.690 kb on + strand at 421.726 kb on - strand at 421.748 kb on - strand, within PGA1_c04370 at 421.808 kb on - strand, within PGA1_c04370 at 421.819 kb on - strand, within PGA1_c04370 at 421.828 kb on + strand, within PGA1_c04370 at 421.838 kb on + strand, within PGA1_c04370 at 421.846 kb on - strand, within PGA1_c04370 at 421.848 kb on + strand, within PGA1_c04370 at 421.856 kb on - strand, within PGA1_c04370 at 421.936 kb on + strand, within PGA1_c04370 at 422.026 kb on + strand, within PGA1_c04370 at 422.039 kb on - strand, within PGA1_c04370
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 418,911 - PGA1_c04330 0.52 -1.9 418,948 - PGA1_c04330 0.59 -2.2 419,007 + PGA1_c04330 0.72 -2.2 419,010 + PGA1_c04330 0.72 -1.8 419,015 - PGA1_c04330 0.73 -2.3 419,015 - PGA1_c04330 0.73 -1.4 419,061 + PGA1_c04330 0.83 -1.0 419,070 - PGA1_c04330 0.85 -1.0 419,081 + PGA1_c04330 0.87 +0.1 419,089 - PGA1_c04330 0.89 -1.7 419,116 - -0.7 419,176 + -3.6 419,176 + -1.4 419,188 - -2.3 419,244 + PGA1_c04340 0.13 -0.4 419,395 - PGA1_c04340 0.33 -2.4 419,395 - PGA1_c04340 0.33 -1.4 419,453 + PGA1_c04340 0.41 -1.9 419,490 + PGA1_c04340 0.46 -1.2 419,524 - PGA1_c04340 0.50 -2.2 419,557 + PGA1_c04340 0.55 -1.4 419,631 - PGA1_c04340 0.64 -2.4 419,839 + -0.7 419,883 - -2.0 419,883 - -2.8 419,892 - -2.4 419,927 - -1.4 419,927 - -1.2 419,930 + -0.7 420,000 + -3.4 420,008 - -2.5 420,068 + PGA1_c04350 0.15 -1.9 420,068 + PGA1_c04350 0.15 +0.2 420,076 - PGA1_c04350 0.16 -1.4 420,076 - PGA1_c04350 0.16 -1.5 420,076 - PGA1_c04350 0.16 -1.1 420,076 - PGA1_c04350 0.16 -2.4 420,156 + PGA1_c04350 0.23 -0.4 420,237 + PGA1_c04350 0.30 -3.1 420,259 - PGA1_c04350 0.32 -0.8 420,261 - PGA1_c04350 0.32 -1.7 420,276 - PGA1_c04350 0.33 -0.7 420,324 + PGA1_c04350 0.37 -2.7 420,378 + PGA1_c04350 0.42 -2.3 420,435 - PGA1_c04350 0.47 -2.6 420,558 + PGA1_c04350 0.58 -2.2 420,665 + PGA1_c04350 0.67 -1.7 420,665 + PGA1_c04350 0.67 -1.8 420,665 + PGA1_c04350 0.67 -1.9 420,665 + PGA1_c04350 0.67 -2.2 420,678 + PGA1_c04350 0.68 -1.7 420,701 + PGA1_c04350 0.70 -0.9 420,701 + PGA1_c04350 0.70 -1.4 420,701 + PGA1_c04350 0.70 -1.9 420,719 - PGA1_c04350 0.72 -1.1 420,746 - PGA1_c04350 0.74 -2.8 420,775 - PGA1_c04350 0.77 -0.9 420,775 - PGA1_c04350 0.77 -1.4 420,780 - PGA1_c04350 0.77 -1.7 420,780 - PGA1_c04350 0.77 -2.4 420,782 + PGA1_c04350 0.77 -1.2 420,804 + PGA1_c04350 0.79 -0.5 420,812 - PGA1_c04350 0.80 -3.1 420,895 - PGA1_c04350 0.87 -1.5 420,902 + PGA1_c04350 0.88 -3.3 420,910 - PGA1_c04350 0.89 -3.1 420,910 - PGA1_c04350 0.89 -2.4 420,910 - PGA1_c04350 0.89 -1.5 420,922 - PGA1_c04350 0.90 -1.4 420,940 - -1.7 420,977 + -2.1 420,990 + -1.2 420,993 + +0.1 420,998 + -1.3 420,998 + -3.3 421,003 + -2.8 421,144 + PGA1_c04360 0.18 -0.9 421,215 + PGA1_c04360 0.30 -2.3 421,243 + PGA1_c04360 0.35 -1.4 421,297 - PGA1_c04360 0.44 -0.4 421,313 + PGA1_c04360 0.47 -1.6 421,321 - PGA1_c04360 0.48 -1.6 421,355 - PGA1_c04360 0.54 -2.2 421,355 - PGA1_c04360 0.54 -0.8 421,362 - PGA1_c04360 0.55 -1.5 421,372 + PGA1_c04360 0.57 -2.2 421,377 - PGA1_c04360 0.58 -0.1 421,377 - PGA1_c04360 0.58 +0.6 421,380 - PGA1_c04360 0.58 -1.3 421,391 - PGA1_c04360 0.60 -0.7 421,468 + PGA1_c04360 0.73 -1.3 421,476 - PGA1_c04360 0.74 -1.5 421,480 - PGA1_c04360 0.75 -1.0 421,503 + PGA1_c04360 0.79 -1.4 421,534 - PGA1_c04360 0.84 -1.7 421,536 + PGA1_c04360 0.84 -1.4 421,591 - +0.6 421,604 + +0.1 421,645 + -0.2 421,690 + -2.6 421,726 - -1.8 421,748 - PGA1_c04370 0.12 -2.7 421,808 - PGA1_c04370 0.18 -1.3 421,819 - PGA1_c04370 0.19 -1.5 421,828 + PGA1_c04370 0.20 -2.7 421,838 + PGA1_c04370 0.21 -2.4 421,846 - PGA1_c04370 0.21 -3.2 421,848 + PGA1_c04370 0.22 -2.7 421,856 - PGA1_c04370 0.22 -1.0 421,936 + PGA1_c04370 0.30 -1.2 422,026 + PGA1_c04370 0.39 -2.6 422,039 - PGA1_c04370 0.40 -1.5
Or see this region's nucleotide sequence