Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00080

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00070 and PGA1_65p00080 are separated by 117 nucleotidesPGA1_65p00080 and PGA1_65p00090 are separated by 261 nucleotides PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217 _65p00070 PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579 _65p00080 PGA1_65p00090: PGA1_65p00090 - Uncharacterized conserved protein, at 12,841 to 14,850 _65p00090 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1at 10.345 kb on + strandat 10.461 kb on - strandat 10.612 kb on - strand, within PGA1_65p00070at 10.613 kb on - strand, within PGA1_65p00070at 10.614 kb on + strand, within PGA1_65p00070at 10.691 kb on + strand, within PGA1_65p00070at 11.219 kb on - strandat 11.234 kb on - strandat 11.241 kb on + strandat 11.442 kb on - strandat 11.749 kb on - strand, within PGA1_65p00080at 11.785 kb on - strand, within PGA1_65p00080at 11.802 kb on + strand, within PGA1_65p00080at 11.869 kb on - strand, within PGA1_65p00080at 12.021 kb on + strand, within PGA1_65p00080at 12.053 kb on + strand, within PGA1_65p00080at 12.083 kb on - strand, within PGA1_65p00080at 12.139 kb on - strand, within PGA1_65p00080at 12.155 kb on + strand, within PGA1_65p00080at 12.251 kb on + strand, within PGA1_65p00080at 12.646 kb on - strandat 12.814 kb on + strandat 12.912 kb on - strandat 13.044 kb on + strand, within PGA1_65p00090at 13.052 kb on + strand, within PGA1_65p00090at 13.074 kb on + strand, within PGA1_65p00090at 13.088 kb on - strand, within PGA1_65p00090at 13.088 kb on - strand, within PGA1_65p00090at 13.372 kb on + strand, within PGA1_65p00090at 13.372 kb on + strand, within PGA1_65p00090at 13.390 kb on - strand, within PGA1_65p00090at 13.441 kb on + strand, within PGA1_65p00090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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10,345 + +0.8
10,461 - +0.0
10,612 - PGA1_65p00070 0.24 +1.4
10,613 - PGA1_65p00070 0.24 +0.2
10,614 + PGA1_65p00070 0.25 +1.1
10,691 + PGA1_65p00070 0.34 +1.0
11,219 - +0.0
11,234 - -1.1
11,241 + +0.9
11,442 - -0.7
11,749 - PGA1_65p00080 0.33 +0.1
11,785 - PGA1_65p00080 0.36 -1.7
11,802 + PGA1_65p00080 0.38 -0.1
11,869 - PGA1_65p00080 0.43 -1.9
12,021 + PGA1_65p00080 0.55 -1.7
12,053 + PGA1_65p00080 0.58 -0.3
12,083 - PGA1_65p00080 0.60 -1.0
12,139 - PGA1_65p00080 0.65 -0.8
12,155 + PGA1_65p00080 0.66 -0.6
12,251 + PGA1_65p00080 0.74 -0.3
12,646 - +0.4
12,814 + +0.2
12,912 - +1.2
13,044 + PGA1_65p00090 0.10 -2.4
13,052 + PGA1_65p00090 0.10 +0.4
13,074 + PGA1_65p00090 0.12 +0.4
13,088 - PGA1_65p00090 0.12 -1.1
13,088 - PGA1_65p00090 0.12 -1.0
13,372 + PGA1_65p00090 0.26 -0.1
13,372 + PGA1_65p00090 0.26 +0.4
13,390 - PGA1_65p00090 0.27 -0.3
13,441 + PGA1_65p00090 0.30 -0.9

Or see this region's nucleotide sequence