Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00070 and PGA1_65p00080 are separated by 117 nucleotides PGA1_65p00080 and PGA1_65p00090 are separated by 261 nucleotides
PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217
_65p00070
PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579
_65p00080
PGA1_65p00090: PGA1_65p00090 - Uncharacterized conserved protein, at 12,841 to 14,850
_65p00090
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 10.345 kb on + strand at 10.461 kb on - strand at 10.612 kb on - strand, within PGA1_65p00070 at 10.613 kb on - strand, within PGA1_65p00070 at 10.614 kb on + strand, within PGA1_65p00070 at 10.691 kb on + strand, within PGA1_65p00070 at 11.219 kb on - strand at 11.234 kb on - strand at 11.241 kb on + strand at 11.442 kb on - strand at 11.749 kb on - strand, within PGA1_65p00080 at 11.785 kb on - strand, within PGA1_65p00080 at 11.802 kb on + strand, within PGA1_65p00080 at 11.869 kb on - strand, within PGA1_65p00080 at 12.021 kb on + strand, within PGA1_65p00080 at 12.053 kb on + strand, within PGA1_65p00080 at 12.083 kb on - strand, within PGA1_65p00080 at 12.139 kb on - strand, within PGA1_65p00080 at 12.155 kb on + strand, within PGA1_65p00080 at 12.251 kb on + strand, within PGA1_65p00080 at 12.646 kb on - strand at 12.814 kb on + strand at 12.912 kb on - strand at 13.044 kb on + strand, within PGA1_65p00090 at 13.052 kb on + strand, within PGA1_65p00090 at 13.074 kb on + strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.390 kb on - strand, within PGA1_65p00090 at 13.441 kb on + strand, within PGA1_65p00090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 10,345 + +0.8 10,461 - +0.0 10,612 - PGA1_65p00070 0.24 +1.4 10,613 - PGA1_65p00070 0.24 +0.2 10,614 + PGA1_65p00070 0.25 +1.1 10,691 + PGA1_65p00070 0.34 +1.0 11,219 - +0.0 11,234 - -1.1 11,241 + +0.9 11,442 - -0.7 11,749 - PGA1_65p00080 0.33 +0.1 11,785 - PGA1_65p00080 0.36 -1.7 11,802 + PGA1_65p00080 0.38 -0.1 11,869 - PGA1_65p00080 0.43 -1.9 12,021 + PGA1_65p00080 0.55 -1.7 12,053 + PGA1_65p00080 0.58 -0.3 12,083 - PGA1_65p00080 0.60 -1.0 12,139 - PGA1_65p00080 0.65 -0.8 12,155 + PGA1_65p00080 0.66 -0.6 12,251 + PGA1_65p00080 0.74 -0.3 12,646 - +0.4 12,814 + +0.2 12,912 - +1.2 13,044 + PGA1_65p00090 0.10 -2.4 13,052 + PGA1_65p00090 0.10 +0.4 13,074 + PGA1_65p00090 0.12 +0.4 13,088 - PGA1_65p00090 0.12 -1.1 13,088 - PGA1_65p00090 0.12 -1.0 13,372 + PGA1_65p00090 0.26 -0.1 13,372 + PGA1_65p00090 0.26 +0.4 13,390 - PGA1_65p00090 0.27 -0.3 13,441 + PGA1_65p00090 0.30 -0.9
Or see this region's nucleotide sequence