Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00510

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00500 and PGA1_78p00510 are separated by 61 nucleotidesPGA1_78p00510 and PGA1_78p00520 overlap by 4 nucleotides PGA1_78p00500: PGA1_78p00500 - putative transcriptional regulator, at 61,904 to 63,124 _78p00500 PGA1_78p00510: PGA1_78p00510 - multidrug transporter MdtB, at 63,186 to 66,329 _78p00510 PGA1_78p00520: PGA1_78p00520 - putative secretion protein, HylD family, at 66,326 to 67,732 _78p00520 Position (kb) 63 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 62.289 kb on - strand, within PGA1_78p00500at 62.289 kb on - strand, within PGA1_78p00500at 62.455 kb on + strand, within PGA1_78p00500at 62.455 kb on + strand, within PGA1_78p00500at 62.985 kb on - strand, within PGA1_78p00500at 63.392 kb on + strandat 63.700 kb on + strand, within PGA1_78p00510at 63.962 kb on + strand, within PGA1_78p00510at 64.188 kb on - strand, within PGA1_78p00510at 64.557 kb on - strand, within PGA1_78p00510at 64.798 kb on - strand, within PGA1_78p00510at 64.899 kb on + strand, within PGA1_78p00510at 64.970 kb on - strand, within PGA1_78p00510at 65.020 kb on + strand, within PGA1_78p00510at 65.211 kb on - strand, within PGA1_78p00510at 66.060 kb on + strandat 66.961 kb on - strand, within PGA1_78p00520

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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62,289 - PGA1_78p00500 0.32 -0.3
62,289 - PGA1_78p00500 0.32 -1.3
62,455 + PGA1_78p00500 0.45 +1.3
62,455 + PGA1_78p00500 0.45 +0.3
62,985 - PGA1_78p00500 0.89 -0.7
63,392 + -0.4
63,700 + PGA1_78p00510 0.16 -1.8
63,962 + PGA1_78p00510 0.25 -0.7
64,188 - PGA1_78p00510 0.32 +1.3
64,557 - PGA1_78p00510 0.44 -1.7
64,798 - PGA1_78p00510 0.51 +1.3
64,899 + PGA1_78p00510 0.54 +0.3
64,970 - PGA1_78p00510 0.57 +1.9
65,020 + PGA1_78p00510 0.58 -1.7
65,211 - PGA1_78p00510 0.64 -1.1
66,060 + -1.3
66,961 - PGA1_78p00520 0.45 +0.5

Or see this region's nucleotide sequence