Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02300 and PGA1_262p02310 are separated by 122 nucleotides PGA1_262p02310 and PGA1_262p02320 are separated by 3 nucleotides
PGA1_262p02300: PGA1_262p02300 - UDP-glucose/GDP-mannose dehydrogenase, at 251,609 to 252,880
_262p02300
PGA1_262p02310: PGA1_262p02310 - amidinotransferase, at 253,003 to 253,785
_262p02310
PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444
_262p02320
Position (kb) 253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 252.116 kb on + strand, within PGA1_262p02300 at 252.116 kb on + strand, within PGA1_262p02300 at 252.124 kb on - strand, within PGA1_262p02300 at 252.212 kb on - strand, within PGA1_262p02300 at 252.359 kb on - strand, within PGA1_262p02300 at 252.372 kb on - strand, within PGA1_262p02300 at 252.424 kb on + strand, within PGA1_262p02300 at 252.429 kb on + strand, within PGA1_262p02300 at 252.437 kb on - strand, within PGA1_262p02300 at 252.437 kb on - strand, within PGA1_262p02300 at 252.523 kb on - strand, within PGA1_262p02300 at 252.710 kb on - strand, within PGA1_262p02300 at 252.836 kb on + strand at 252.949 kb on - strand at 253.203 kb on + strand, within PGA1_262p02310 at 253.290 kb on - strand, within PGA1_262p02310 at 253.290 kb on - strand, within PGA1_262p02310 at 253.372 kb on + strand, within PGA1_262p02310 at 253.445 kb on + strand, within PGA1_262p02310 at 253.469 kb on - strand, within PGA1_262p02310 at 253.623 kb on + strand, within PGA1_262p02310 at 253.623 kb on + strand, within PGA1_262p02310 at 253.631 kb on - strand, within PGA1_262p02310 at 253.694 kb on - strand, within PGA1_262p02310 at 253.694 kb on - strand, within PGA1_262p02310 at 253.765 kb on + strand at 253.878 kb on - strand at 253.887 kb on + strand at 253.904 kb on - strand at 253.988 kb on + strand, within PGA1_262p02320 at 254.372 kb on + strand, within PGA1_262p02320 at 254.377 kb on + strand, within PGA1_262p02320 at 254.380 kb on - strand, within PGA1_262p02320 at 254.590 kb on - strand, within PGA1_262p02320 at 254.592 kb on + strand, within PGA1_262p02320 at 254.655 kb on - strand, within PGA1_262p02320 at 254.765 kb on - strand, within PGA1_262p02320 at 254.770 kb on - strand, within PGA1_262p02320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 252,116 + PGA1_262p02300 0.40 -1.6 252,116 + PGA1_262p02300 0.40 -1.1 252,124 - PGA1_262p02300 0.40 +0.8 252,212 - PGA1_262p02300 0.47 -0.0 252,359 - PGA1_262p02300 0.59 +2.5 252,372 - PGA1_262p02300 0.60 -1.3 252,424 + PGA1_262p02300 0.64 -1.0 252,429 + PGA1_262p02300 0.64 -2.8 252,437 - PGA1_262p02300 0.65 -1.1 252,437 - PGA1_262p02300 0.65 -0.2 252,523 - PGA1_262p02300 0.72 -1.9 252,710 - PGA1_262p02300 0.87 -0.8 252,836 + -3.0 252,949 - +0.1 253,203 + PGA1_262p02310 0.26 -0.2 253,290 - PGA1_262p02310 0.37 +0.0 253,290 - PGA1_262p02310 0.37 -1.8 253,372 + PGA1_262p02310 0.47 -1.0 253,445 + PGA1_262p02310 0.56 -0.9 253,469 - PGA1_262p02310 0.60 -0.8 253,623 + PGA1_262p02310 0.79 -1.6 253,623 + PGA1_262p02310 0.79 -0.1 253,631 - PGA1_262p02310 0.80 -0.1 253,694 - PGA1_262p02310 0.88 -0.0 253,694 - PGA1_262p02310 0.88 +0.2 253,765 + +0.7 253,878 - -0.1 253,887 + +0.2 253,904 - +1.0 253,988 + PGA1_262p02320 0.12 +1.0 254,372 + PGA1_262p02320 0.35 -0.4 254,377 + PGA1_262p02320 0.36 +0.4 254,380 - PGA1_262p02320 0.36 -0.3 254,590 - PGA1_262p02320 0.48 +1.5 254,592 + PGA1_262p02320 0.48 +1.3 254,655 - PGA1_262p02320 0.52 -0.5 254,765 - PGA1_262p02320 0.59 -0.4 254,770 - PGA1_262p02320 0.59 +0.8
Or see this region's nucleotide sequence