Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02260

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02240 and PGA1_262p02250 overlap by 1 nucleotidesPGA1_262p02250 and PGA1_262p02260 are separated by 121 nucleotidesPGA1_262p02260 and PGA1_262p02270 are separated by 20 nucleotides PGA1_262p02240: PGA1_262p02240 - zinc import ATP-binding protein ZnuC, at 241,433 to 242,209 _262p02240 PGA1_262p02250: PGA1_262p02250 - high-affinity zinc uptake system membrane protein ZnuB, at 242,209 to 243,006 _262p02250 PGA1_262p02260: PGA1_262p02260 - putative two-component sensor histidine kinase/response regulator hybrid protein, at 243,128 to 245,407 _262p02260 PGA1_262p02270: PGA1_262p02270 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 245,428 to 246,360 _262p02270 Position (kb) 243 244 245 246Strain fitness (log2 ratio) -1 0 1at 242.150 kb on + strandat 242.150 kb on + strandat 242.150 kb on + strandat 243.000 kb on + strandat 243.008 kb on - strandat 243.008 kb on - strandat 243.050 kb on - strandat 243.060 kb on - strandat 243.111 kb on + strandat 243.116 kb on + strandat 243.117 kb on + strandat 243.119 kb on - strandat 243.124 kb on - strandat 243.125 kb on - strandat 243.291 kb on - strandat 243.304 kb on - strandat 243.339 kb on - strandat 243.382 kb on - strand, within PGA1_262p02260at 243.459 kb on + strand, within PGA1_262p02260at 243.467 kb on - strand, within PGA1_262p02260at 243.492 kb on - strand, within PGA1_262p02260at 243.495 kb on + strand, within PGA1_262p02260at 243.602 kb on + strand, within PGA1_262p02260at 243.659 kb on + strand, within PGA1_262p02260at 243.889 kb on + strand, within PGA1_262p02260at 243.939 kb on - strand, within PGA1_262p02260at 244.044 kb on - strand, within PGA1_262p02260at 244.045 kb on - strand, within PGA1_262p02260at 244.070 kb on + strand, within PGA1_262p02260at 244.123 kb on - strand, within PGA1_262p02260at 244.123 kb on - strand, within PGA1_262p02260at 244.201 kb on - strand, within PGA1_262p02260at 244.546 kb on - strand, within PGA1_262p02260at 244.734 kb on - strand, within PGA1_262p02260at 244.821 kb on - strand, within PGA1_262p02260at 244.921 kb on - strand, within PGA1_262p02260at 244.933 kb on - strand, within PGA1_262p02260at 244.948 kb on + strand, within PGA1_262p02260at 244.980 kb on + strand, within PGA1_262p02260at 245.091 kb on + strand, within PGA1_262p02260at 245.149 kb on - strand, within PGA1_262p02260at 245.172 kb on - strand, within PGA1_262p02260at 245.387 kb on + strandat 245.412 kb on - strandat 245.419 kb on - strandat 245.419 kb on - strandat 245.448 kb on - strandat 245.485 kb on + strandat 245.591 kb on - strand, within PGA1_262p02270at 245.730 kb on + strand, within PGA1_262p02270at 245.730 kb on + strand, within PGA1_262p02270at 245.748 kb on + strand, within PGA1_262p02270at 245.763 kb on + strand, within PGA1_262p02270at 245.766 kb on - strand, within PGA1_262p02270at 245.771 kb on - strand, within PGA1_262p02270at 245.771 kb on - strand, within PGA1_262p02270at 245.827 kb on - strand, within PGA1_262p02270at 245.856 kb on - strand, within PGA1_262p02270at 245.895 kb on - strand, within PGA1_262p02270at 245.908 kb on - strand, within PGA1_262p02270at 245.917 kb on - strand, within PGA1_262p02270at 245.982 kb on - strand, within PGA1_262p02270at 245.985 kb on + strand, within PGA1_262p02270at 245.996 kb on + strand, within PGA1_262p02270at 245.996 kb on + strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.092 kb on + strand, within PGA1_262p02270at 246.132 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.201 kb on - strand, within PGA1_262p02270at 246.231 kb on + strand, within PGA1_262p02270at 246.262 kb on + strand, within PGA1_262p02270at 246.265 kb on + strand, within PGA1_262p02270at 246.273 kb on - strandat 246.273 kb on - strandat 246.278 kb on + strandat 246.321 kb on + strandat 246.321 kb on + strandat 246.327 kb on + strandat 246.332 kb on + strandat 246.339 kb on - strandat 246.340 kb on - strandat 246.367 kb on + strandat 246.367 kb on + strandat 246.367 kb on + strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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242,150 + -0.5
242,150 + +1.0
242,150 + -0.8
243,000 + +1.2
243,008 - -0.4
243,008 - -1.2
243,050 - -0.5
243,060 - -0.0
243,111 + +0.2
243,116 + -0.3
243,117 + -0.8
243,119 - +0.2
243,124 - -0.3
243,125 - +0.5
243,291 - -0.6
243,304 - -1.5
243,339 - +0.6
243,382 - PGA1_262p02260 0.11 -0.0
243,459 + PGA1_262p02260 0.15 +0.4
243,467 - PGA1_262p02260 0.15 -0.8
243,492 - PGA1_262p02260 0.16 -1.7
243,495 + PGA1_262p02260 0.16 -0.5
243,602 + PGA1_262p02260 0.21 +0.2
243,659 + PGA1_262p02260 0.23 +0.2
243,889 + PGA1_262p02260 0.33 -0.5
243,939 - PGA1_262p02260 0.36 -1.4
244,044 - PGA1_262p02260 0.40 -0.7
244,045 - PGA1_262p02260 0.40 +0.6
244,070 + PGA1_262p02260 0.41 +0.3
244,123 - PGA1_262p02260 0.44 -1.2
244,123 - PGA1_262p02260 0.44 -0.8
244,201 - PGA1_262p02260 0.47 +0.2
244,546 - PGA1_262p02260 0.62 +0.2
244,734 - PGA1_262p02260 0.70 -0.8
244,821 - PGA1_262p02260 0.74 +1.0
244,921 - PGA1_262p02260 0.79 -0.8
244,933 - PGA1_262p02260 0.79 -0.8
244,948 + PGA1_262p02260 0.80 -0.7
244,980 + PGA1_262p02260 0.81 +0.2
245,091 + PGA1_262p02260 0.86 +0.2
245,149 - PGA1_262p02260 0.89 -0.8
245,172 - PGA1_262p02260 0.90 -1.5
245,387 + -0.8
245,412 - +0.2
245,419 - +1.2
245,419 - +0.9
245,448 - -0.6
245,485 + -0.5
245,591 - PGA1_262p02270 0.17 +0.2
245,730 + PGA1_262p02270 0.32 -0.7
245,730 + PGA1_262p02270 0.32 -0.3
245,748 + PGA1_262p02270 0.34 +0.2
245,763 + PGA1_262p02270 0.36 -1.4
245,766 - PGA1_262p02270 0.36 -1.1
245,771 - PGA1_262p02270 0.37 -0.1
245,771 - PGA1_262p02270 0.37 -0.2
245,827 - PGA1_262p02270 0.43 +0.4
245,856 - PGA1_262p02270 0.46 -1.1
245,895 - PGA1_262p02270 0.50 +0.4
245,908 - PGA1_262p02270 0.51 +1.2
245,917 - PGA1_262p02270 0.52 -1.5
245,982 - PGA1_262p02270 0.59 -0.1
245,985 + PGA1_262p02270 0.60 -0.1
245,996 + PGA1_262p02270 0.61 +1.2
245,996 + PGA1_262p02270 0.61 -0.4
246,004 - PGA1_262p02270 0.62 +0.7
246,004 - PGA1_262p02270 0.62 +0.7
246,004 - PGA1_262p02270 0.62 +0.1
246,092 + PGA1_262p02270 0.71 -0.0
246,132 - PGA1_262p02270 0.75 -0.6
246,168 - PGA1_262p02270 0.79 +0.1
246,168 - PGA1_262p02270 0.79 -0.3
246,168 - PGA1_262p02270 0.79 +0.6
246,201 - PGA1_262p02270 0.83 -1.5
246,231 + PGA1_262p02270 0.86 -0.2
246,262 + PGA1_262p02270 0.89 -1.0
246,265 + PGA1_262p02270 0.90 -0.1
246,273 - -0.8
246,273 - +0.4
246,278 + -0.4
246,321 + +1.1
246,321 + -0.5
246,327 + +0.6
246,332 + -0.6
246,339 - +0.8
246,340 - +1.0
246,367 + -0.2
246,367 + -1.0
246,367 + -0.6
246,375 - +0.1
246,375 - +0.8
246,375 - -0.3
246,375 - +0.2
246,375 - +0.0
246,375 - -0.2
246,375 - -1.1
246,399 + +0.2

Or see this region's nucleotide sequence