Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01970

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01960 and PGA1_262p01970 are separated by 168 nucleotidesPGA1_262p01970 and PGA1_262p01980 are separated by 43 nucleotidesPGA1_262p01980 and PGA1_262p01990 are separated by 97 nucleotides PGA1_262p01960: PGA1_262p01960 - hypothetical protein, at 215,123 to 215,875 _262p01960 PGA1_262p01970: PGA1_262p01970 - putative transcriptional regulator, TetR family, at 216,044 to 216,652 _262p01970 PGA1_262p01980: PGA1_262p01980 - putative enoyl-CoA hydratase, at 216,696 to 217,487 _262p01980 PGA1_262p01990: PGA1_262p01990 - Predicted permeases, at 217,585 to 218,607 _262p01990 Position (kb) 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.080 kb on + strandat 215.083 kb on + strandat 215.095 kb on + strandat 215.096 kb on - strandat 215.098 kb on - strandat 215.103 kb on - strandat 215.105 kb on + strandat 215.105 kb on + strandat 215.105 kb on + strandat 215.105 kb on + strandat 215.105 kb on + strandat 215.105 kb on + strandat 215.105 kb on + strandat 215.106 kb on + strandat 215.113 kb on - strandat 215.113 kb on - strandat 215.113 kb on - strandat 215.123 kb on - strandat 215.124 kb on + strandat 215.142 kb on - strandat 215.142 kb on - strandat 215.179 kb on - strandat 215.189 kb on - strandat 215.190 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.195 kb on + strandat 215.202 kb on + strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.203 kb on - strand, within PGA1_262p01960at 215.207 kb on + strand, within PGA1_262p01960at 215.207 kb on + strand, within PGA1_262p01960at 215.207 kb on + strand, within PGA1_262p01960at 215.207 kb on + strand, within PGA1_262p01960at 215.215 kb on - strand, within PGA1_262p01960at 215.215 kb on - strand, within PGA1_262p01960at 215.229 kb on + strand, within PGA1_262p01960at 215.236 kb on + strand, within PGA1_262p01960at 215.236 kb on + strand, within PGA1_262p01960at 215.244 kb on - strand, within PGA1_262p01960at 215.244 kb on - strand, within PGA1_262p01960at 215.244 kb on - strand, within PGA1_262p01960at 215.260 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.265 kb on + strand, within PGA1_262p01960at 215.268 kb on - strand, within PGA1_262p01960at 215.268 kb on - strand, within PGA1_262p01960at 215.271 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.273 kb on - strand, within PGA1_262p01960at 215.278 kb on - strand, within PGA1_262p01960at 215.308 kb on + strand, within PGA1_262p01960at 215.315 kb on + strand, within PGA1_262p01960at 215.316 kb on - strand, within PGA1_262p01960at 215.319 kb on + strand, within PGA1_262p01960at 215.319 kb on + strand, within PGA1_262p01960at 215.323 kb on - strand, within PGA1_262p01960at 215.327 kb on - strand, within PGA1_262p01960at 215.327 kb on - strand, within PGA1_262p01960at 215.352 kb on + strand, within PGA1_262p01960at 215.352 kb on + strand, within PGA1_262p01960at 215.354 kb on + strand, within PGA1_262p01960at 215.360 kb on - strand, within PGA1_262p01960at 215.361 kb on - strand, within PGA1_262p01960at 215.363 kb on + strand, within PGA1_262p01960at 215.373 kb on - strand, within PGA1_262p01960at 215.404 kb on + strand, within PGA1_262p01960at 215.404 kb on + strand, within PGA1_262p01960at 215.409 kb on + strand, within PGA1_262p01960at 215.412 kb on - strand, within PGA1_262p01960at 215.412 kb on - strand, within PGA1_262p01960at 215.412 kb on - strand, within PGA1_262p01960at 215.412 kb on - strand, within PGA1_262p01960at 215.414 kb on + strand, within PGA1_262p01960at 215.414 kb on + strand, within PGA1_262p01960at 215.422 kb on - strand, within PGA1_262p01960at 215.422 kb on - strand, within PGA1_262p01960at 215.422 kb on - strand, within PGA1_262p01960at 215.422 kb on - strand, within PGA1_262p01960at 215.449 kb on + strand, within PGA1_262p01960at 215.449 kb on + strand, within PGA1_262p01960at 215.457 kb on - strand, within PGA1_262p01960at 215.461 kb on - strand, within PGA1_262p01960at 215.473 kb on + strand, within PGA1_262p01960at 215.476 kb on - strand, within PGA1_262p01960at 215.481 kb on - strand, within PGA1_262p01960at 215.483 kb on + strand, within PGA1_262p01960at 215.491 kb on - strand, within PGA1_262p01960at 215.493 kb on + strand, within PGA1_262p01960at 215.501 kb on - strand, within PGA1_262p01960at 215.508 kb on + strand, within PGA1_262p01960at 215.515 kb on + strand, within PGA1_262p01960at 215.518 kb on - strand, within PGA1_262p01960at 215.523 kb on + strand, within PGA1_262p01960at 215.530 kb on + strand, within PGA1_262p01960at 215.530 kb on + strand, within PGA1_262p01960at 215.531 kb on - strand, within PGA1_262p01960at 215.578 kb on + strand, within PGA1_262p01960at 215.596 kb on + strand, within PGA1_262p01960at 215.602 kb on - strand, within PGA1_262p01960at 215.660 kb on + strand, within PGA1_262p01960at 215.693 kb on + strand, within PGA1_262p01960at 215.698 kb on - strand, within PGA1_262p01960at 215.701 kb on - strand, within PGA1_262p01960at 215.707 kb on - strand, within PGA1_262p01960at 215.799 kb on + strand, within PGA1_262p01960at 215.799 kb on + strand, within PGA1_262p01960at 215.799 kb on + strand, within PGA1_262p01960at 215.907 kb on + strandat 215.907 kb on + strandat 215.907 kb on + strandat 215.915 kb on - strandat 215.915 kb on - strandat 215.915 kb on - strandat 215.917 kb on + strandat 215.937 kb on + strandat 215.942 kb on + strandat 215.947 kb on - strandat 215.950 kb on - strandat 215.950 kb on - strandat 215.955 kb on + strandat 215.968 kb on - strandat 215.977 kb on + strandat 216.001 kb on + strandat 216.207 kb on + strand, within PGA1_262p01970at 216.251 kb on - strand, within PGA1_262p01970at 216.251 kb on - strand, within PGA1_262p01970at 216.292 kb on - strand, within PGA1_262p01970at 216.397 kb on - strand, within PGA1_262p01970at 216.430 kb on + strand, within PGA1_262p01970at 216.438 kb on - strand, within PGA1_262p01970at 216.438 kb on - strand, within PGA1_262p01970at 216.488 kb on - strand, within PGA1_262p01970at 216.526 kb on + strand, within PGA1_262p01970at 216.532 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.534 kb on - strand, within PGA1_262p01970at 216.616 kb on + strandat 216.636 kb on - strandat 216.660 kb on + strandat 216.739 kb on + strandat 216.739 kb on + strandat 216.744 kb on + strandat 216.744 kb on + strandat 216.744 kb on + strandat 216.747 kb on - strandat 216.752 kb on - strandat 216.752 kb on - strandat 216.764 kb on + strandat 216.772 kb on + strandat 216.784 kb on - strand, within PGA1_262p01980at 216.784 kb on - strand, within PGA1_262p01980at 216.784 kb on - strand, within PGA1_262p01980at 216.862 kb on - strand, within PGA1_262p01980at 216.864 kb on + strand, within PGA1_262p01980at 216.875 kb on + strand, within PGA1_262p01980at 216.922 kb on - strand, within PGA1_262p01980at 216.922 kb on - strand, within PGA1_262p01980at 216.965 kb on + strand, within PGA1_262p01980at 216.973 kb on - strand, within PGA1_262p01980at 216.973 kb on - strand, within PGA1_262p01980at 217.011 kb on + strand, within PGA1_262p01980at 217.049 kb on + strand, within PGA1_262p01980at 217.114 kb on - strand, within PGA1_262p01980at 217.268 kb on + strand, within PGA1_262p01980at 217.273 kb on - strand, within PGA1_262p01980at 217.279 kb on + strand, within PGA1_262p01980at 217.346 kb on + strand, within PGA1_262p01980at 217.353 kb on + strand, within PGA1_262p01980at 217.355 kb on + strand, within PGA1_262p01980at 217.363 kb on - strand, within PGA1_262p01980at 217.400 kb on - strand, within PGA1_262p01980at 217.409 kb on + strandat 217.445 kb on - strandat 217.446 kb on - strandat 217.582 kb on + strandat 217.582 kb on + strandat 217.624 kb on + strandat 217.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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215,080 + +1.7
215,083 + +0.2
215,095 + -0.3
215,096 - -0.2
215,098 - -0.5
215,103 - -0.5
215,105 + -0.4
215,105 + +0.2
215,105 + -0.7
215,105 + +0.2
215,105 + +0.4
215,105 + -0.6
215,105 + -1.3
215,106 + -0.3
215,113 - -1.2
215,113 - -0.3
215,113 - +1.2
215,123 - +0.4
215,124 + +1.5
215,142 - -0.1
215,142 - +2.2
215,179 - -1.8
215,189 - +0.9
215,190 + -1.3
215,195 + -0.5
215,195 + -0.0
215,195 + +0.5
215,195 + -0.4
215,195 + +1.2
215,195 + -0.3
215,195 + -1.2
215,195 + +0.0
215,195 + -1.0
215,202 + PGA1_262p01960 0.10 -1.8
215,203 - PGA1_262p01960 0.11 +0.2
215,203 - PGA1_262p01960 0.11 +0.2
215,203 - PGA1_262p01960 0.11 +0.7
215,203 - PGA1_262p01960 0.11 +1.4
215,203 - PGA1_262p01960 0.11 +1.7
215,203 - PGA1_262p01960 0.11 -0.4
215,203 - PGA1_262p01960 0.11 -0.3
215,203 - PGA1_262p01960 0.11 +0.2
215,203 - PGA1_262p01960 0.11 -1.5
215,203 - PGA1_262p01960 0.11 -0.2
215,203 - PGA1_262p01960 0.11 +0.0
215,203 - PGA1_262p01960 0.11 +0.2
215,203 - PGA1_262p01960 0.11 -0.2
215,203 - PGA1_262p01960 0.11 +0.7
215,203 - PGA1_262p01960 0.11 -0.2
215,203 - PGA1_262p01960 0.11 +1.2
215,203 - PGA1_262p01960 0.11 -0.5
215,203 - PGA1_262p01960 0.11 -0.5
215,207 + PGA1_262p01960 0.11 +0.4
215,207 + PGA1_262p01960 0.11 +0.4
215,207 + PGA1_262p01960 0.11 +0.2
215,207 + PGA1_262p01960 0.11 -0.4
215,215 - PGA1_262p01960 0.12 +1.0
215,215 - PGA1_262p01960 0.12 +0.9
215,229 + PGA1_262p01960 0.14 -2.1
215,236 + PGA1_262p01960 0.15 +0.2
215,236 + PGA1_262p01960 0.15 -1.0
215,244 - PGA1_262p01960 0.16 +0.5
215,244 - PGA1_262p01960 0.16 +0.2
215,244 - PGA1_262p01960 0.16 +1.2
215,260 + PGA1_262p01960 0.18 -0.1
215,265 + PGA1_262p01960 0.19 -0.5
215,265 + PGA1_262p01960 0.19 -1.1
215,265 + PGA1_262p01960 0.19 -0.8
215,265 + PGA1_262p01960 0.19 +1.4
215,265 + PGA1_262p01960 0.19 +0.2
215,265 + PGA1_262p01960 0.19 -1.1
215,265 + PGA1_262p01960 0.19 +2.2
215,265 + PGA1_262p01960 0.19 +0.5
215,268 - PGA1_262p01960 0.19 -0.1
215,268 - PGA1_262p01960 0.19 -0.6
215,271 - PGA1_262p01960 0.20 +0.2
215,273 - PGA1_262p01960 0.20 -0.8
215,273 - PGA1_262p01960 0.20 +0.2
215,273 - PGA1_262p01960 0.20 +1.0
215,273 - PGA1_262p01960 0.20 +0.7
215,273 - PGA1_262p01960 0.20 -0.8
215,273 - PGA1_262p01960 0.20 -0.4
215,273 - PGA1_262p01960 0.20 +1.0
215,273 - PGA1_262p01960 0.20 -0.3
215,273 - PGA1_262p01960 0.20 +0.2
215,273 - PGA1_262p01960 0.20 +1.3
215,273 - PGA1_262p01960 0.20 +0.8
215,273 - PGA1_262p01960 0.20 +0.4
215,273 - PGA1_262p01960 0.20 -0.7
215,273 - PGA1_262p01960 0.20 +0.9
215,273 - PGA1_262p01960 0.20 -0.8
215,273 - PGA1_262p01960 0.20 -0.1
215,273 - PGA1_262p01960 0.20 +0.6
215,273 - PGA1_262p01960 0.20 -0.5
215,273 - PGA1_262p01960 0.20 -0.2
215,273 - PGA1_262p01960 0.20 +0.8
215,273 - PGA1_262p01960 0.20 -0.1
215,273 - PGA1_262p01960 0.20 +0.2
215,273 - PGA1_262p01960 0.20 -0.7
215,273 - PGA1_262p01960 0.20 -1.7
215,273 - PGA1_262p01960 0.20 +1.4
215,273 - PGA1_262p01960 0.20 +1.3
215,278 - PGA1_262p01960 0.21 +0.2
215,308 + PGA1_262p01960 0.25 +0.3
215,315 + PGA1_262p01960 0.25 -1.4
215,316 - PGA1_262p01960 0.26 -1.2
215,319 + PGA1_262p01960 0.26 -0.8
215,319 + PGA1_262p01960 0.26 +0.6
215,323 - PGA1_262p01960 0.27 -1.1
215,327 - PGA1_262p01960 0.27 +0.2
215,327 - PGA1_262p01960 0.27 +0.7
215,352 + PGA1_262p01960 0.30 -0.8
215,352 + PGA1_262p01960 0.30 +0.2
215,354 + PGA1_262p01960 0.31 +0.3
215,360 - PGA1_262p01960 0.31 -0.3
215,361 - PGA1_262p01960 0.32 +0.1
215,363 + PGA1_262p01960 0.32 +0.9
215,373 - PGA1_262p01960 0.33 -0.8
215,404 + PGA1_262p01960 0.37 -0.8
215,404 + PGA1_262p01960 0.37 +0.6
215,409 + PGA1_262p01960 0.38 +1.1
215,412 - PGA1_262p01960 0.38 -1.1
215,412 - PGA1_262p01960 0.38 -0.4
215,412 - PGA1_262p01960 0.38 -0.3
215,412 - PGA1_262p01960 0.38 +0.2
215,414 + PGA1_262p01960 0.39 +1.0
215,414 + PGA1_262p01960 0.39 +1.4
215,422 - PGA1_262p01960 0.40 +0.4
215,422 - PGA1_262p01960 0.40 -0.7
215,422 - PGA1_262p01960 0.40 +0.1
215,422 - PGA1_262p01960 0.40 -0.2
215,449 + PGA1_262p01960 0.43 +0.6
215,449 + PGA1_262p01960 0.43 -2.0
215,457 - PGA1_262p01960 0.44 -0.0
215,461 - PGA1_262p01960 0.45 +0.2
215,473 + PGA1_262p01960 0.46 +0.9
215,476 - PGA1_262p01960 0.47 +0.4
215,481 - PGA1_262p01960 0.48 -0.1
215,483 + PGA1_262p01960 0.48 -1.8
215,491 - PGA1_262p01960 0.49 +0.2
215,493 + PGA1_262p01960 0.49 +0.2
215,501 - PGA1_262p01960 0.50 +1.2
215,508 + PGA1_262p01960 0.51 -0.7
215,515 + PGA1_262p01960 0.52 +0.0
215,518 - PGA1_262p01960 0.52 +0.2
215,523 + PGA1_262p01960 0.53 +0.9
215,530 + PGA1_262p01960 0.54 +0.4
215,530 + PGA1_262p01960 0.54 -0.5
215,531 - PGA1_262p01960 0.54 +0.7
215,578 + PGA1_262p01960 0.60 -1.4
215,596 + PGA1_262p01960 0.63 +0.2
215,602 - PGA1_262p01960 0.64 -0.1
215,660 + PGA1_262p01960 0.71 +0.2
215,693 + PGA1_262p01960 0.76 +0.0
215,698 - PGA1_262p01960 0.76 -0.8
215,701 - PGA1_262p01960 0.77 -0.2
215,707 - PGA1_262p01960 0.78 +0.6
215,799 + PGA1_262p01960 0.90 -0.1
215,799 + PGA1_262p01960 0.90 -1.9
215,799 + PGA1_262p01960 0.90 +0.5
215,907 + +0.2
215,907 + +1.1
215,907 + -0.5
215,915 - +0.9
215,915 - -1.4
215,915 - +0.0
215,917 + +2.3
215,937 + -0.6
215,942 + -1.6
215,947 - +1.2
215,950 - +1.0
215,950 - +0.2
215,955 + -0.6
215,968 - +1.8
215,977 + +0.2
216,001 + -0.2
216,207 + PGA1_262p01970 0.27 -0.2
216,251 - PGA1_262p01970 0.34 -1.4
216,251 - PGA1_262p01970 0.34 -0.8
216,292 - PGA1_262p01970 0.41 -0.4
216,397 - PGA1_262p01970 0.58 -2.3
216,430 + PGA1_262p01970 0.63 +0.4
216,438 - PGA1_262p01970 0.65 +0.2
216,438 - PGA1_262p01970 0.65 -1.7
216,488 - PGA1_262p01970 0.73 -0.7
216,526 + PGA1_262p01970 0.79 +0.6
216,532 - PGA1_262p01970 0.80 -1.1
216,534 - PGA1_262p01970 0.80 -0.3
216,534 - PGA1_262p01970 0.80 +0.4
216,534 - PGA1_262p01970 0.80 -0.3
216,534 - PGA1_262p01970 0.80 +0.8
216,534 - PGA1_262p01970 0.80 -3.6
216,616 + +1.5
216,636 - -0.6
216,660 + +0.9
216,739 + +0.9
216,739 + +0.1
216,744 + +0.4
216,744 + -1.6
216,744 + -0.4
216,747 - -0.6
216,752 - +0.2
216,752 - +0.2
216,764 + +0.6
216,772 + -0.9
216,784 - PGA1_262p01980 0.11 +0.2
216,784 - PGA1_262p01980 0.11 -0.3
216,784 - PGA1_262p01980 0.11 -0.8
216,862 - PGA1_262p01980 0.21 +0.6
216,864 + PGA1_262p01980 0.21 +1.2
216,875 + PGA1_262p01980 0.23 +0.2
216,922 - PGA1_262p01980 0.29 -0.2
216,922 - PGA1_262p01980 0.29 -0.4
216,965 + PGA1_262p01980 0.34 +0.9
216,973 - PGA1_262p01980 0.35 -1.5
216,973 - PGA1_262p01980 0.35 -0.5
217,011 + PGA1_262p01980 0.40 +0.3
217,049 + PGA1_262p01980 0.45 +0.7
217,114 - PGA1_262p01980 0.53 +0.6
217,268 + PGA1_262p01980 0.72 -0.2
217,273 - PGA1_262p01980 0.73 -0.8
217,279 + PGA1_262p01980 0.74 +2.1
217,346 + PGA1_262p01980 0.82 +0.2
217,353 + PGA1_262p01980 0.83 -0.4
217,355 + PGA1_262p01980 0.83 -0.8
217,363 - PGA1_262p01980 0.84 -0.2
217,400 - PGA1_262p01980 0.89 +0.0
217,409 + -0.1
217,445 - -0.5
217,446 - -0.5
217,582 + -0.3
217,582 + +0.6
217,624 + -0.8
217,632 - +0.0

Or see this region's nucleotide sequence