Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00670 and PGA1_262p00680 are separated by 108 nucleotides PGA1_262p00680 and PGA1_262p00690 are separated by 161 nucleotides PGA1_262p00690 and PGA1_262p00700 are separated by 1 nucleotides PGA1_262p00700 and PGA1_262p00710 overlap by 4 nucleotides PGA1_262p00710 and PGA1_262p00720 overlap by 4 nucleotides
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
PGA1_262p00680: PGA1_262p00680 - Uncharacterized membrane protein, at 78,782 to 79,336
_262p00680
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
PGA1_262p00700: PGA1_262p00700 - stressosome protein rsbS-like protein, at 80,375 to 80,737
_262p00700
PGA1_262p00710: PGA1_262p00710 - serine/threonine-protein kinase RsbT-like protein, at 80,734 to 81,141
_262p00710
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 78.498 kb on - strand, within PGA1_262p00670 at 78.537 kb on - strand, within PGA1_262p00670 at 78.825 kb on + strand at 78.830 kb on + strand at 78.838 kb on - strand, within PGA1_262p00680 at 78.838 kb on - strand, within PGA1_262p00680 at 79.096 kb on + strand, within PGA1_262p00680 at 79.210 kb on - strand, within PGA1_262p00680 at 79.229 kb on - strand, within PGA1_262p00680 at 79.261 kb on - strand, within PGA1_262p00680 at 79.279 kb on + strand, within PGA1_262p00680 at 79.279 kb on + strand, within PGA1_262p00680 at 79.349 kb on - strand at 79.451 kb on - strand at 79.493 kb on - strand at 79.514 kb on + strand at 79.514 kb on + strand at 79.539 kb on + strand at 79.602 kb on - strand, within PGA1_262p00690 at 79.636 kb on - strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.641 kb on - strand, within PGA1_262p00690 at 79.646 kb on - strand, within PGA1_262p00690 at 79.688 kb on - strand, within PGA1_262p00690 at 79.705 kb on - strand, within PGA1_262p00690 at 79.751 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.783 kb on - strand, within PGA1_262p00690 at 79.822 kb on + strand, within PGA1_262p00690 at 80.023 kb on + strand, within PGA1_262p00690 at 80.116 kb on - strand, within PGA1_262p00690 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand at 80.350 kb on - strand at 80.600 kb on + strand, within PGA1_262p00700 at 80.600 kb on + strand, within PGA1_262p00700 at 80.674 kb on + strand, within PGA1_262p00700 at 80.957 kb on + strand, within PGA1_262p00710 at 80.959 kb on + strand, within PGA1_262p00710 at 81.138 kb on - strand at 81.155 kb on - strand at 81.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 78,498 - PGA1_262p00670 0.87 -1.1 78,537 - PGA1_262p00670 0.90 -0.2 78,825 + +2.4 78,830 + +1.0 78,838 - PGA1_262p00680 0.10 +0.5 78,838 - PGA1_262p00680 0.10 +0.3 79,096 + PGA1_262p00680 0.57 +0.2 79,210 - PGA1_262p00680 0.77 -0.8 79,229 - PGA1_262p00680 0.81 -0.3 79,261 - PGA1_262p00680 0.86 -0.3 79,279 + PGA1_262p00680 0.90 -0.3 79,279 + PGA1_262p00680 0.90 -0.1 79,349 - +0.3 79,451 - +0.7 79,493 - +0.4 79,514 + -0.5 79,514 + +3.0 79,539 + +0.2 79,602 - PGA1_262p00690 0.12 -1.4 79,636 - PGA1_262p00690 0.16 +1.2 79,638 + PGA1_262p00690 0.16 -1.8 79,638 + PGA1_262p00690 0.16 +0.2 79,641 - PGA1_262p00690 0.16 +0.3 79,646 - PGA1_262p00690 0.17 +1.4 79,688 - PGA1_262p00690 0.22 +1.1 79,705 - PGA1_262p00690 0.24 +0.8 79,751 + PGA1_262p00690 0.29 +0.2 79,775 + PGA1_262p00690 0.32 -1.9 79,775 + PGA1_262p00690 0.32 +0.6 79,783 - PGA1_262p00690 0.33 +0.8 79,822 + PGA1_262p00690 0.37 +0.3 80,023 + PGA1_262p00690 0.60 +0.7 80,116 - PGA1_262p00690 0.71 +1.8 80,239 - PGA1_262p00690 0.85 +0.9 80,334 - +0.5 80,350 - -0.3 80,600 + PGA1_262p00700 0.62 +0.5 80,600 + PGA1_262p00700 0.62 -1.6 80,674 + PGA1_262p00700 0.82 +0.2 80,957 + PGA1_262p00710 0.55 +0.3 80,959 + PGA1_262p00710 0.55 +0.2 81,138 - -0.2 81,155 - -0.2 81,238 - +0.5
Or see this region's nucleotide sequence