Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00420 and PGA1_262p00430 are separated by 186 nucleotides PGA1_262p00430 and PGA1_262p00440 are separated by 118 nucleotides
PGA1_262p00420: PGA1_262p00420 - Transcriptional regulator/sugar kinase, at 50,426 to 51,640
_262p00420
PGA1_262p00430: PGA1_262p00430 - glucose transporter, periplasmic substrate-binding component <small>(from data)</small>, at 51,827 to 52,852
_262p00430
PGA1_262p00440: PGA1_262p00440 - glucose transporter, permease component <small>(from data)</small>, at 52,971 to 54,272
_262p00440
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.959 kb on - strand, within PGA1_262p00420 at 51.165 kb on - strand, within PGA1_262p00420 at 51.203 kb on + strand, within PGA1_262p00420 at 51.211 kb on - strand, within PGA1_262p00420 at 51.224 kb on + strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.409 kb on + strand, within PGA1_262p00420 at 51.442 kb on + strand, within PGA1_262p00420 at 51.553 kb on + strand at 51.676 kb on + strand at 51.706 kb on - strand at 51.764 kb on + strand at 51.776 kb on + strand at 51.783 kb on + strand at 51.784 kb on - strand at 51.989 kb on + strand, within PGA1_262p00430 at 51.997 kb on - strand, within PGA1_262p00430 at 52.107 kb on - strand, within PGA1_262p00430 at 52.270 kb on + strand, within PGA1_262p00430 at 52.375 kb on + strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.426 kb on - strand, within PGA1_262p00430 at 52.697 kb on + strand, within PGA1_262p00430 at 52.913 kb on - strand at 52.953 kb on + strand at 52.992 kb on - strand at 53.006 kb on + strand at 53.014 kb on - strand at 53.142 kb on - strand, within PGA1_262p00440 at 53.189 kb on - strand, within PGA1_262p00440 at 53.234 kb on + strand, within PGA1_262p00440 at 53.253 kb on - strand, within PGA1_262p00440 at 53.301 kb on + strand, within PGA1_262p00440 at 53.546 kb on + strand, within PGA1_262p00440 at 53.613 kb on + strand, within PGA1_262p00440 at 53.671 kb on + strand, within PGA1_262p00440 at 53.767 kb on - strand, within PGA1_262p00440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 50,959 - PGA1_262p00420 0.44 -0.5 51,165 - PGA1_262p00420 0.61 +0.3 51,203 + PGA1_262p00420 0.64 -1.1 51,211 - PGA1_262p00420 0.65 +1.2 51,224 + PGA1_262p00420 0.66 -0.2 51,387 - PGA1_262p00420 0.79 -0.6 51,387 - PGA1_262p00420 0.79 +1.1 51,409 + PGA1_262p00420 0.81 +0.3 51,442 + PGA1_262p00420 0.84 +0.0 51,553 + +1.8 51,676 + -0.6 51,706 - +0.2 51,764 + -0.3 51,776 + -0.4 51,783 + -0.4 51,784 - +0.2 51,989 + PGA1_262p00430 0.16 -1.4 51,997 - PGA1_262p00430 0.17 -0.4 52,107 - PGA1_262p00430 0.27 +0.2 52,270 + PGA1_262p00430 0.43 -0.8 52,375 + PGA1_262p00430 0.53 -0.1 52,383 - PGA1_262p00430 0.54 -0.3 52,383 - PGA1_262p00430 0.54 +0.2 52,383 - PGA1_262p00430 0.54 -0.3 52,383 - PGA1_262p00430 0.54 -0.5 52,426 - PGA1_262p00430 0.58 -1.0 52,697 + PGA1_262p00430 0.85 -0.4 52,913 - +1.7 52,953 + -0.8 52,992 - -1.1 53,006 + -1.1 53,014 - +1.0 53,142 - PGA1_262p00440 0.13 -1.8 53,189 - PGA1_262p00440 0.17 -0.8 53,234 + PGA1_262p00440 0.20 +0.7 53,253 - PGA1_262p00440 0.22 -0.3 53,301 + PGA1_262p00440 0.25 -0.8 53,546 + PGA1_262p00440 0.44 +1.2 53,613 + PGA1_262p00440 0.49 +0.0 53,671 + PGA1_262p00440 0.54 -0.4 53,767 - PGA1_262p00440 0.61 -1.2
Or see this region's nucleotide sequence