Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35140 and PGA1_c35150 overlap by 4 nucleotides PGA1_c35150 and PGA1_c35160 overlap by 4 nucleotides PGA1_c35160 and PGA1_c35170 overlap by 8 nucleotides PGA1_c35170 and PGA1_c35180 are separated by 75 nucleotides
PGA1_c35140: PGA1_c35140 - Maf-like protein, at 3,687,370 to 3,687,969
_c35140
PGA1_c35150: PGA1_c35150 - shikimate dehydrogenase AroE, at 3,687,966 to 3,688,799
_c35150
PGA1_c35160: PGA1_c35160 - dephospho-CoA kinase CoaE, at 3,688,796 to 3,689,389
_c35160
PGA1_c35170: PGA1_c35170 - DNA polymerase III subunit epsilon, at 3,689,382 to 3,690,119
_c35170
PGA1_c35180: PGA1_c35180 - protein-export protein SecB, at 3,690,195 to 3,690,689
_c35180
Position (kb)
3688
3689
3690 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3687.797 kb on + strand, within PGA1_c35140 at 3687.805 kb on - strand, within PGA1_c35140 at 3687.805 kb on - strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.857 kb on - strand, within PGA1_c35140 at 3687.865 kb on - strand, within PGA1_c35140 at 3687.890 kb on - strand, within PGA1_c35140 at 3687.904 kb on - strand, within PGA1_c35140 at 3687.904 kb on - strand, within PGA1_c35140 at 3687.904 kb on - strand, within PGA1_c35140 at 3687.936 kb on - strand at 3687.938 kb on + strand at 3688.793 kb on + strand at 3688.793 kb on + strand at 3688.793 kb on + strand at 3689.458 kb on + strand, within PGA1_c35170 at 3689.505 kb on + strand, within PGA1_c35170 at 3689.568 kb on - strand, within PGA1_c35170 at 3689.724 kb on - strand, within PGA1_c35170 at 3689.989 kb on + strand, within PGA1_c35170 at 3690.007 kb on + strand, within PGA1_c35170 at 3690.093 kb on + strand at 3690.096 kb on + strand at 3690.096 kb on + strand at 3690.096 kb on + strand at 3690.098 kb on + strand at 3690.104 kb on - strand at 3690.161 kb on - strand at 3690.186 kb on + strand at 3690.186 kb on + strand at 3690.186 kb on + strand at 3690.194 kb on - strand at 3690.194 kb on - strand at 3690.194 kb on - strand at 3690.204 kb on + strand at 3690.225 kb on - strand at 3690.225 kb on - strand at 3690.225 kb on - strand at 3690.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,687,797 + PGA1_c35140 0.71 -0.5 3,687,805 - PGA1_c35140 0.72 -0.4 3,687,805 - PGA1_c35140 0.72 +0.1 3,687,821 + PGA1_c35140 0.75 -0.7 3,687,821 + PGA1_c35140 0.75 -0.5 3,687,821 + PGA1_c35140 0.75 -1.7 3,687,821 + PGA1_c35140 0.75 -0.6 3,687,829 - PGA1_c35140 0.77 +0.2 3,687,829 - PGA1_c35140 0.77 +0.3 3,687,829 - PGA1_c35140 0.77 +0.4 3,687,829 - PGA1_c35140 0.77 +0.3 3,687,857 - PGA1_c35140 0.81 +0.8 3,687,865 - PGA1_c35140 0.82 +0.8 3,687,890 - PGA1_c35140 0.87 +0.6 3,687,904 - PGA1_c35140 0.89 +0.6 3,687,904 - PGA1_c35140 0.89 -0.2 3,687,904 - PGA1_c35140 0.89 -0.2 3,687,936 - +1.6 3,687,938 + +1.1 3,688,793 + -0.2 3,688,793 + +0.3 3,688,793 + -0.3 3,689,458 + PGA1_c35170 0.10 +2.4 3,689,505 + PGA1_c35170 0.17 +2.5 3,689,568 - PGA1_c35170 0.25 +2.1 3,689,724 - PGA1_c35170 0.46 +3.1 3,689,989 + PGA1_c35170 0.82 +1.5 3,690,007 + PGA1_c35170 0.85 +2.3 3,690,093 + -0.2 3,690,096 + -1.0 3,690,096 + -0.2 3,690,096 + -0.0 3,690,098 + -0.9 3,690,104 - -1.2 3,690,161 - -1.0 3,690,186 + +0.2 3,690,186 + +0.5 3,690,186 + +1.9 3,690,194 - -1.0 3,690,194 - -1.7 3,690,194 - -0.9 3,690,204 + +0.6 3,690,225 - +0.3 3,690,225 - +0.6 3,690,225 - +0.8 3,690,225 - +0.4
Or see this region's nucleotide sequence