Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34470 and PGA1_c34480 are separated by 97 nucleotides PGA1_c34480 and PGA1_c34490 are separated by 186 nucleotides PGA1_c34490 and PGA1_c34500 overlap by 1 nucleotides
PGA1_c34470: PGA1_c34470 - UDP-glucose 4-epimerase ExoB, at 3,614,495 to 3,615,478
_c34470
PGA1_c34480: PGA1_c34480 - UTP--glucose-1-phosphate uridylyltransferase CelA, at 3,615,576 to 3,616,469
_c34480
PGA1_c34490: PGA1_c34490 - 3-deoxy-manno-octulosonate cytidylyltransferase KdsB, at 3,616,656 to 3,617,456
_c34490
PGA1_c34500: PGA1_c34500 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,617,456 to 3,618,253
_c34500
Position (kb)
3615
3616
3617 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3614.682 kb on + strand, within PGA1_c34470 at 3614.719 kb on - strand, within PGA1_c34470 at 3614.829 kb on - strand, within PGA1_c34470 at 3615.079 kb on - strand, within PGA1_c34470 at 3615.102 kb on - strand, within PGA1_c34470 at 3615.120 kb on - strand, within PGA1_c34470 at 3615.130 kb on - strand, within PGA1_c34470 at 3615.181 kb on + strand, within PGA1_c34470 at 3615.181 kb on + strand, within PGA1_c34470 at 3615.230 kb on - strand, within PGA1_c34470 at 3615.279 kb on + strand, within PGA1_c34470 at 3615.328 kb on - strand, within PGA1_c34470 at 3615.334 kb on + strand, within PGA1_c34470 at 3615.408 kb on + strand at 3615.448 kb on - strand at 3615.466 kb on + strand at 3615.530 kb on + strand at 3615.573 kb on + strand at 3615.597 kb on - strand at 3615.664 kb on + strand at 3615.686 kb on + strand, within PGA1_c34480 at 3615.842 kb on - strand, within PGA1_c34480 at 3615.883 kb on + strand, within PGA1_c34480 at 3616.008 kb on + strand, within PGA1_c34480 at 3616.216 kb on + strand, within PGA1_c34480 at 3616.224 kb on - strand, within PGA1_c34480 at 3616.373 kb on - strand, within PGA1_c34480 at 3616.486 kb on - strand at 3616.500 kb on + strand at 3616.508 kb on - strand at 3616.508 kb on - strand at 3616.508 kb on - strand at 3616.511 kb on + strand at 3616.514 kb on + strand at 3616.574 kb on - strand at 3616.588 kb on + strand at 3616.600 kb on + strand at 3616.604 kb on + strand at 3616.610 kb on + strand at 3616.611 kb on + strand at 3616.612 kb on - strand at 3616.618 kb on - strand at 3616.618 kb on - strand at 3616.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 3,614,682 + PGA1_c34470 0.19 +1.8 3,614,719 - PGA1_c34470 0.23 -0.9 3,614,829 - PGA1_c34470 0.34 +1.4 3,615,079 - PGA1_c34470 0.59 -0.4 3,615,102 - PGA1_c34470 0.62 -2.2 3,615,120 - PGA1_c34470 0.64 +0.4 3,615,130 - PGA1_c34470 0.65 +0.4 3,615,181 + PGA1_c34470 0.70 -0.5 3,615,181 + PGA1_c34470 0.70 +0.1 3,615,230 - PGA1_c34470 0.75 -1.0 3,615,279 + PGA1_c34470 0.80 -0.5 3,615,328 - PGA1_c34470 0.85 -0.7 3,615,334 + PGA1_c34470 0.85 -0.3 3,615,408 + -0.1 3,615,448 - +0.0 3,615,466 + -1.5 3,615,530 + +0.7 3,615,573 + +0.6 3,615,597 - +0.0 3,615,664 + -3.6 3,615,686 + PGA1_c34480 0.12 -1.8 3,615,842 - PGA1_c34480 0.30 -2.3 3,615,883 + PGA1_c34480 0.34 +0.8 3,616,008 + PGA1_c34480 0.48 -2.2 3,616,216 + PGA1_c34480 0.72 -0.2 3,616,224 - PGA1_c34480 0.72 -1.5 3,616,373 - PGA1_c34480 0.89 -1.9 3,616,486 - -0.4 3,616,500 + +0.1 3,616,508 - -1.2 3,616,508 - -0.5 3,616,508 - +0.6 3,616,511 + -0.2 3,616,514 + +0.0 3,616,574 - -0.4 3,616,588 + +0.8 3,616,600 + +0.2 3,616,604 + -0.3 3,616,610 + -0.4 3,616,611 + +0.7 3,616,612 - +0.2 3,616,618 - -0.4 3,616,618 - -1.1 3,616,629 - +0.2
Or see this region's nucleotide sequence