Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03390 and PGA1_c03400 are separated by 205 nucleotides PGA1_c03400 and PGA1_c03410 are separated by 298 nucleotides
PGA1_c03390: PGA1_c03390 - acetoacetyl-CoA reductase PhaB, at 325,552 to 326,274
_c03390
PGA1_c03400: PGA1_c03400 - acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) <small>(from data)</small>, at 326,480 to 327,655
_c03400
PGA1_c03410: PGA1_c03410 - EAL domain-containing protein, at 327,954 to 328,796
_c03410
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.519 kb on + strand at 325.624 kb on - strand at 325.634 kb on - strand, within PGA1_c03390 at 325.634 kb on - strand, within PGA1_c03390 at 325.762 kb on + strand, within PGA1_c03390 at 325.770 kb on - strand, within PGA1_c03390 at 325.791 kb on - strand, within PGA1_c03390 at 325.807 kb on + strand, within PGA1_c03390 at 325.840 kb on + strand, within PGA1_c03390 at 325.843 kb on - strand, within PGA1_c03390 at 325.845 kb on - strand, within PGA1_c03390 at 325.922 kb on - strand, within PGA1_c03390 at 325.922 kb on - strand, within PGA1_c03390 at 325.937 kb on + strand, within PGA1_c03390 at 325.937 kb on + strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.947 kb on - strand, within PGA1_c03390 at 325.968 kb on - strand, within PGA1_c03390 at 325.988 kb on + strand, within PGA1_c03390 at 326.071 kb on - strand, within PGA1_c03390 at 326.087 kb on + strand, within PGA1_c03390 at 326.094 kb on + strand, within PGA1_c03390 at 326.094 kb on + strand, within PGA1_c03390 at 326.095 kb on - strand, within PGA1_c03390 at 326.191 kb on + strand, within PGA1_c03390 at 326.192 kb on + strand, within PGA1_c03390 at 326.192 kb on + strand, within PGA1_c03390 at 326.192 kb on + strand, within PGA1_c03390 at 326.199 kb on - strand, within PGA1_c03390 at 326.199 kb on - strand, within PGA1_c03390 at 326.200 kb on - strand, within PGA1_c03390 at 326.200 kb on - strand, within PGA1_c03390 at 326.238 kb on + strand at 326.366 kb on + strand at 326.374 kb on - strand at 326.450 kb on - strand at 326.461 kb on - strand at 326.478 kb on + strand at 326.496 kb on - strand at 326.530 kb on + strand at 326.540 kb on + strand at 326.611 kb on - strand, within PGA1_c03400 at 326.675 kb on - strand, within PGA1_c03400 at 326.685 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.693 kb on - strand, within PGA1_c03400 at 326.693 kb on - strand, within PGA1_c03400 at 326.693 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.759 kb on - strand, within PGA1_c03400 at 326.763 kb on + strand, within PGA1_c03400 at 326.779 kb on + strand, within PGA1_c03400 at 326.788 kb on - strand, within PGA1_c03400 at 326.806 kb on + strand, within PGA1_c03400 at 326.843 kb on - strand, within PGA1_c03400 at 326.848 kb on + strand, within PGA1_c03400 at 326.856 kb on - strand, within PGA1_c03400 at 326.872 kb on + strand, within PGA1_c03400 at 326.882 kb on + strand, within PGA1_c03400 at 326.888 kb on - strand, within PGA1_c03400 at 326.898 kb on - strand, within PGA1_c03400 at 326.944 kb on - strand, within PGA1_c03400 at 327.026 kb on + strand, within PGA1_c03400 at 327.034 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.147 kb on - strand, within PGA1_c03400 at 327.178 kb on - strand, within PGA1_c03400 at 327.179 kb on + strand, within PGA1_c03400 at 327.268 kb on - strand, within PGA1_c03400 at 327.278 kb on - strand, within PGA1_c03400 at 327.326 kb on + strand, within PGA1_c03400 at 327.329 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.382 kb on + strand, within PGA1_c03400 at 327.390 kb on + strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.400 kb on + strand, within PGA1_c03400 at 327.407 kb on + strand, within PGA1_c03400 at 327.431 kb on - strand, within PGA1_c03400 at 327.438 kb on + strand, within PGA1_c03400 at 327.443 kb on + strand, within PGA1_c03400 at 327.463 kb on + strand, within PGA1_c03400 at 327.483 kb on - strand, within PGA1_c03400 at 327.547 kb on - strand at 327.557 kb on - strand at 327.671 kb on + strand at 327.679 kb on - strand at 327.679 kb on - strand at 327.701 kb on - strand at 327.703 kb on + strand at 327.711 kb on - strand at 327.711 kb on - strand at 327.755 kb on + strand at 327.767 kb on + strand at 327.767 kb on - strand at 327.774 kb on + strand at 327.791 kb on + strand at 327.796 kb on + strand at 327.799 kb on - strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.844 kb on - strand at 327.848 kb on + strand at 327.854 kb on - strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.891 kb on + strand at 327.900 kb on - strand at 327.921 kb on - strand at 327.940 kb on + strand at 327.940 kb on - strand at 327.942 kb on + strand at 327.943 kb on - strand at 327.950 kb on - strand at 327.958 kb on - strand at 327.960 kb on - strand at 327.961 kb on + strand at 327.991 kb on - strand at 328.002 kb on + strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.012 kb on + strand at 328.026 kb on + strand at 328.034 kb on - strand at 328.070 kb on + strand, within PGA1_c03410 at 328.316 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.324 kb on - strand, within PGA1_c03410 at 328.347 kb on + strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.441 kb on + strand, within PGA1_c03410 at 328.453 kb on - strand, within PGA1_c03410 at 328.463 kb on + strand, within PGA1_c03410 at 328.502 kb on + strand, within PGA1_c03410 at 328.504 kb on - strand, within PGA1_c03410 at 328.507 kb on + strand, within PGA1_c03410 at 328.517 kb on + strand, within PGA1_c03410 at 328.599 kb on + strand, within PGA1_c03410 at 328.614 kb on - strand, within PGA1_c03410 at 328.616 kb on + strand, within PGA1_c03410 at 328.633 kb on + strand, within PGA1_c03410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 325,519 + +0.2 325,624 - -0.7 325,634 - PGA1_c03390 0.11 -0.3 325,634 - PGA1_c03390 0.11 +0.4 325,762 + PGA1_c03390 0.29 +0.3 325,770 - PGA1_c03390 0.30 -0.0 325,791 - PGA1_c03390 0.33 +0.3 325,807 + PGA1_c03390 0.35 -0.0 325,840 + PGA1_c03390 0.40 +0.4 325,843 - PGA1_c03390 0.40 -0.9 325,845 - PGA1_c03390 0.41 +0.5 325,922 - PGA1_c03390 0.51 +1.3 325,922 - PGA1_c03390 0.51 -0.9 325,937 + PGA1_c03390 0.53 +0.7 325,937 + PGA1_c03390 0.53 -0.2 325,945 - PGA1_c03390 0.54 -0.0 325,945 - PGA1_c03390 0.54 -1.0 325,945 - PGA1_c03390 0.54 +0.3 325,945 - PGA1_c03390 0.54 -0.5 325,947 - PGA1_c03390 0.55 -1.2 325,968 - PGA1_c03390 0.58 +0.7 325,988 + PGA1_c03390 0.60 +1.0 326,071 - PGA1_c03390 0.72 -0.5 326,087 + PGA1_c03390 0.74 +0.4 326,094 + PGA1_c03390 0.75 +1.0 326,094 + PGA1_c03390 0.75 +0.2 326,095 - PGA1_c03390 0.75 -0.2 326,191 + PGA1_c03390 0.88 -0.6 326,192 + PGA1_c03390 0.89 +0.6 326,192 + PGA1_c03390 0.89 -0.9 326,192 + PGA1_c03390 0.89 +0.1 326,199 - PGA1_c03390 0.89 +0.3 326,199 - PGA1_c03390 0.89 -1.9 326,200 - PGA1_c03390 0.90 -0.0 326,200 - PGA1_c03390 0.90 +0.0 326,238 + +1.1 326,366 + -0.9 326,374 - -1.3 326,450 - +0.2 326,461 - +0.2 326,478 + +1.0 326,496 - +0.3 326,530 + -0.5 326,540 + +1.4 326,611 - PGA1_c03400 0.11 +0.1 326,675 - PGA1_c03400 0.17 +0.7 326,685 + PGA1_c03400 0.17 +1.0 326,690 + PGA1_c03400 0.18 +0.3 326,690 + PGA1_c03400 0.18 +0.1 326,690 + PGA1_c03400 0.18 -0.5 326,690 + PGA1_c03400 0.18 +0.2 326,690 + PGA1_c03400 0.18 -0.1 326,690 + PGA1_c03400 0.18 -1.1 326,690 + PGA1_c03400 0.18 +1.2 326,690 + PGA1_c03400 0.18 -1.3 326,693 - PGA1_c03400 0.18 +0.1 326,693 - PGA1_c03400 0.18 +0.2 326,693 - PGA1_c03400 0.18 +0.3 326,698 - PGA1_c03400 0.19 +0.6 326,698 - PGA1_c03400 0.19 +0.5 326,698 - PGA1_c03400 0.19 +0.1 326,698 - PGA1_c03400 0.19 -0.8 326,698 - PGA1_c03400 0.19 +0.7 326,698 - PGA1_c03400 0.19 +0.2 326,698 - PGA1_c03400 0.19 -0.2 326,698 - PGA1_c03400 0.19 +0.8 326,698 - PGA1_c03400 0.19 +0.7 326,698 - PGA1_c03400 0.19 -0.3 326,698 - PGA1_c03400 0.19 -0.2 326,759 - PGA1_c03400 0.24 -1.6 326,763 + PGA1_c03400 0.24 +0.3 326,779 + PGA1_c03400 0.25 +0.0 326,788 - PGA1_c03400 0.26 -1.0 326,806 + PGA1_c03400 0.28 +0.2 326,843 - PGA1_c03400 0.31 -1.3 326,848 + PGA1_c03400 0.31 +1.4 326,856 - PGA1_c03400 0.32 +0.4 326,872 + PGA1_c03400 0.33 +2.1 326,882 + PGA1_c03400 0.34 +0.6 326,888 - PGA1_c03400 0.35 -2.1 326,898 - PGA1_c03400 0.36 -0.3 326,944 - PGA1_c03400 0.39 -0.1 327,026 + PGA1_c03400 0.46 -0.4 327,034 - PGA1_c03400 0.47 -1.1 327,058 - PGA1_c03400 0.49 +1.0 327,058 - PGA1_c03400 0.49 +0.5 327,102 + PGA1_c03400 0.53 -0.1 327,102 + PGA1_c03400 0.53 +0.0 327,147 - PGA1_c03400 0.57 +1.3 327,178 - PGA1_c03400 0.59 +0.3 327,179 + PGA1_c03400 0.59 +0.5 327,268 - PGA1_c03400 0.67 +0.5 327,278 - PGA1_c03400 0.68 -1.3 327,326 + PGA1_c03400 0.72 -0.3 327,329 - PGA1_c03400 0.72 +0.1 327,334 - PGA1_c03400 0.73 +0.0 327,334 - PGA1_c03400 0.73 +1.1 327,334 - PGA1_c03400 0.73 -0.0 327,382 + PGA1_c03400 0.77 -0.4 327,390 + PGA1_c03400 0.77 +0.8 327,390 - PGA1_c03400 0.77 +0.3 327,390 - PGA1_c03400 0.77 +0.3 327,400 + PGA1_c03400 0.78 +1.1 327,407 + PGA1_c03400 0.79 +0.2 327,431 - PGA1_c03400 0.81 -0.0 327,438 + PGA1_c03400 0.81 -0.3 327,443 + PGA1_c03400 0.82 -0.7 327,463 + PGA1_c03400 0.84 +0.3 327,483 - PGA1_c03400 0.85 -0.5 327,547 - +0.7 327,557 - -1.1 327,671 + +0.2 327,679 - -0.2 327,679 - +1.6 327,701 - +0.4 327,703 + -0.3 327,711 - +1.4 327,711 - -0.2 327,755 + -0.2 327,767 + +1.4 327,767 - +0.7 327,774 + -0.6 327,791 + -0.8 327,796 + +1.3 327,799 - -0.4 327,801 + +0.5 327,801 + +0.2 327,801 + +1.2 327,801 + +1.1 327,801 + +0.5 327,801 + -0.9 327,801 + +0.0 327,801 + +0.1 327,801 + -0.6 327,809 - +2.3 327,809 - -1.3 327,809 - +0.0 327,809 - +2.3 327,844 - +0.1 327,848 + +0.7 327,854 - -0.3 327,881 + +1.0 327,881 + -0.3 327,881 + -0.0 327,881 + +0.1 327,881 + +0.4 327,881 + +0.3 327,881 + -0.0 327,881 + +2.2 327,889 - -0.1 327,889 - -0.6 327,889 - +0.1 327,889 - -0.9 327,889 - -0.5 327,889 - +0.7 327,889 - -0.8 327,889 - +0.6 327,889 - +0.2 327,889 - +0.3 327,889 - +0.2 327,889 - -0.0 327,889 - -0.8 327,889 - +0.2 327,889 - -0.6 327,889 - +1.8 327,889 - -0.2 327,891 + +0.1 327,900 - +0.5 327,921 - -0.1 327,940 + -0.3 327,940 - +1.1 327,942 + +0.2 327,943 - -0.9 327,950 - +0.0 327,958 - +0.5 327,960 - -1.2 327,961 + +0.8 327,991 - +0.6 328,002 + -2.1 328,010 - -0.9 328,010 - -0.3 328,010 - +0.0 328,010 - -0.9 328,012 + +0.5 328,026 + -0.7 328,034 - -0.9 328,070 + PGA1_c03410 0.14 -1.0 328,316 + PGA1_c03410 0.43 -0.3 328,321 + PGA1_c03410 0.44 -1.0 328,321 + PGA1_c03410 0.44 +0.5 328,324 - PGA1_c03410 0.44 -0.4 328,347 + PGA1_c03410 0.47 -1.5 328,350 - PGA1_c03410 0.47 -0.3 328,350 - PGA1_c03410 0.47 +0.5 328,441 + PGA1_c03410 0.58 -1.0 328,453 - PGA1_c03410 0.59 +0.2 328,463 + PGA1_c03410 0.60 +1.3 328,502 + PGA1_c03410 0.65 +1.0 328,504 - PGA1_c03410 0.65 +0.8 328,507 + PGA1_c03410 0.66 +0.7 328,517 + PGA1_c03410 0.67 +0.4 328,599 + PGA1_c03410 0.77 +1.5 328,614 - PGA1_c03410 0.78 +0.4 328,616 + PGA1_c03410 0.79 -0.4 328,633 + PGA1_c03410 0.81 -0.3
Or see this region's nucleotide sequence