Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03280 and PGA1_c03290 are separated by 108 nucleotides PGA1_c03290 and PGA1_c03300 are separated by 531 nucleotides
PGA1_c03280: PGA1_c03280 - hypothetical protein, at 313,659 to 314,672
_c03280
PGA1_c03290: PGA1_c03290 - transcription elongation factor GreA, at 314,781 to 315,251
_c03290
PGA1_c03300: PGA1_c03300 - glyoxalase/bleomycin resistance protein domain-containing protein, at 315,783 to 316,166
_c03300
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.802 kb on - strand, within PGA1_c03280 at 313.847 kb on + strand, within PGA1_c03280 at 313.855 kb on - strand, within PGA1_c03280 at 314.042 kb on - strand, within PGA1_c03280 at 314.042 kb on - strand, within PGA1_c03280 at 314.044 kb on + strand, within PGA1_c03280 at 314.109 kb on - strand, within PGA1_c03280 at 314.121 kb on + strand, within PGA1_c03280 at 314.215 kb on + strand, within PGA1_c03280 at 314.299 kb on - strand, within PGA1_c03280 at 314.342 kb on - strand, within PGA1_c03280 at 314.380 kb on + strand, within PGA1_c03280 at 314.419 kb on - strand, within PGA1_c03280 at 314.426 kb on + strand, within PGA1_c03280 at 314.434 kb on - strand, within PGA1_c03280 at 314.451 kb on - strand, within PGA1_c03280 at 314.504 kb on + strand, within PGA1_c03280 at 314.613 kb on + strand at 314.667 kb on + strand at 314.676 kb on - strand at 314.705 kb on + strand at 314.709 kb on - strand at 314.713 kb on - strand at 314.713 kb on - strand at 314.750 kb on + strand at 314.785 kb on + strand at 314.835 kb on + strand, within PGA1_c03290 at 314.858 kb on - strand, within PGA1_c03290 at 314.870 kb on + strand, within PGA1_c03290 at 314.877 kb on + strand, within PGA1_c03290 at 314.885 kb on - strand, within PGA1_c03290 at 314.895 kb on - strand, within PGA1_c03290 at 315.135 kb on - strand, within PGA1_c03290 at 315.157 kb on + strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.216 kb on + strand at 315.232 kb on - strand at 315.329 kb on + strand at 315.359 kb on - strand at 315.372 kb on - strand at 315.374 kb on + strand at 315.473 kb on - strand at 315.513 kb on - strand at 315.519 kb on + strand at 315.533 kb on - strand at 315.542 kb on + strand at 315.542 kb on + strand at 315.550 kb on - strand at 315.550 kb on - strand at 315.553 kb on + strand at 315.561 kb on - strand at 315.569 kb on - strand at 315.649 kb on - strand at 315.655 kb on + strand at 315.655 kb on + strand at 315.711 kb on - strand at 315.740 kb on + strand at 315.760 kb on + strand at 315.858 kb on + strand, within PGA1_c03300 at 315.858 kb on + strand, within PGA1_c03300 at 315.871 kb on + strand, within PGA1_c03300 at 315.875 kb on + strand, within PGA1_c03300 at 315.896 kb on + strand, within PGA1_c03300 at 315.902 kb on - strand, within PGA1_c03300 at 315.926 kb on - strand, within PGA1_c03300 at 315.961 kb on - strand, within PGA1_c03300 at 315.966 kb on - strand, within PGA1_c03300 at 315.969 kb on + strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.989 kb on + strand, within PGA1_c03300 at 315.989 kb on - strand, within PGA1_c03300 at 315.997 kb on - strand, within PGA1_c03300 at 316.033 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.042 kb on - strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.156 kb on - strand at 316.167 kb on + strand at 316.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 313,802 - PGA1_c03280 0.14 +1.0 313,847 + PGA1_c03280 0.19 +0.0 313,855 - PGA1_c03280 0.19 -0.8 314,042 - PGA1_c03280 0.38 +0.2 314,042 - PGA1_c03280 0.38 +2.5 314,044 + PGA1_c03280 0.38 -0.0 314,109 - PGA1_c03280 0.44 +0.1 314,121 + PGA1_c03280 0.46 +0.3 314,215 + PGA1_c03280 0.55 +0.5 314,299 - PGA1_c03280 0.63 +1.0 314,342 - PGA1_c03280 0.67 +0.9 314,380 + PGA1_c03280 0.71 +0.9 314,419 - PGA1_c03280 0.75 -0.6 314,426 + PGA1_c03280 0.76 +0.3 314,434 - PGA1_c03280 0.76 +0.2 314,451 - PGA1_c03280 0.78 -0.0 314,504 + PGA1_c03280 0.83 +0.7 314,613 + -0.4 314,667 + -1.8 314,676 - -0.0 314,705 + +0.8 314,709 - +0.7 314,713 - -0.8 314,713 - -0.6 314,750 + +0.1 314,785 + -0.8 314,835 + PGA1_c03290 0.11 -1.0 314,858 - PGA1_c03290 0.16 -2.9 314,870 + PGA1_c03290 0.19 -0.0 314,877 + PGA1_c03290 0.20 -0.3 314,885 - PGA1_c03290 0.22 -0.6 314,895 - PGA1_c03290 0.24 -0.6 315,135 - PGA1_c03290 0.75 -0.7 315,157 + PGA1_c03290 0.80 -0.9 315,165 - PGA1_c03290 0.82 -0.6 315,165 - PGA1_c03290 0.82 -0.3 315,216 + -0.3 315,232 - -0.5 315,329 + +0.1 315,359 - -1.2 315,372 - +0.7 315,374 + +1.3 315,473 - +0.5 315,513 - -0.3 315,519 + +0.3 315,533 - +0.5 315,542 + +0.1 315,542 + -0.4 315,550 - +1.1 315,550 - -0.0 315,553 + +0.3 315,561 - +0.1 315,569 - -1.2 315,649 - -1.5 315,655 + -1.0 315,655 + +0.5 315,711 - +0.1 315,740 + -0.5 315,760 + +0.6 315,858 + PGA1_c03300 0.20 -0.7 315,858 + PGA1_c03300 0.20 -0.7 315,871 + PGA1_c03300 0.23 +1.5 315,875 + PGA1_c03300 0.24 -0.6 315,896 + PGA1_c03300 0.29 +0.9 315,902 - PGA1_c03300 0.31 -0.7 315,926 - PGA1_c03300 0.37 +0.3 315,961 - PGA1_c03300 0.46 -0.3 315,966 - PGA1_c03300 0.48 -0.1 315,969 + PGA1_c03300 0.48 +0.9 315,969 - PGA1_c03300 0.48 -0.3 315,969 - PGA1_c03300 0.48 -0.6 315,989 + PGA1_c03300 0.54 +1.0 315,989 - PGA1_c03300 0.54 +0.7 315,997 - PGA1_c03300 0.56 +0.2 316,033 + PGA1_c03300 0.65 -0.3 316,034 + PGA1_c03300 0.65 +1.1 316,034 + PGA1_c03300 0.65 +0.7 316,042 - PGA1_c03300 0.67 -1.2 316,123 + PGA1_c03300 0.89 +0.4 316,123 + PGA1_c03300 0.89 +0.3 316,156 - -0.7 316,167 + +1.4 316,169 - -0.7
Or see this region's nucleotide sequence