Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03000 and PGA1_c03010 are separated by 278 nucleotides PGA1_c03010 and PGA1_c03020 overlap by 1 nucleotides PGA1_c03020 and PGA1_c03030 are separated by 5 nucleotides PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides
PGA1_c03000: PGA1_c03000 - YHS domain., at 288,655 to 289,128
_c03000
PGA1_c03010: PGA1_c03010 - glycerol-3-phosphate acyltransferase PlsY, at 289,407 to 290,012
_c03010
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 289.013 kb on - strand, within PGA1_c03000 at 289.014 kb on - strand, within PGA1_c03000 at 289.036 kb on - strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.070 kb on + strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.088 kb on - strand at 289.097 kb on + strand at 289.130 kb on + strand at 289.131 kb on + strand at 289.138 kb on - strand at 289.139 kb on - strand at 289.158 kb on - strand at 289.169 kb on + strand at 289.169 kb on + strand at 289.194 kb on - strand at 289.233 kb on - strand at 289.243 kb on - strand at 289.278 kb on + strand at 289.333 kb on - strand at 289.352 kb on - strand at 289.413 kb on - strand at 290.017 kb on - strand at 290.065 kb on - strand at 290.135 kb on + strand at 290.135 kb on + strand at 290.145 kb on + strand, within PGA1_c03020 at 290.180 kb on + strand, within PGA1_c03020 at 290.193 kb on - strand, within PGA1_c03020 at 290.198 kb on - strand, within PGA1_c03020 at 290.306 kb on - strand, within PGA1_c03020 at 290.336 kb on + strand, within PGA1_c03020 at 290.379 kb on - strand, within PGA1_c03020 at 290.409 kb on + strand, within PGA1_c03020 at 290.417 kb on - strand, within PGA1_c03020 at 290.417 kb on - strand, within PGA1_c03020 at 290.437 kb on - strand, within PGA1_c03020 at 290.452 kb on + strand, within PGA1_c03020 at 290.467 kb on + strand, within PGA1_c03020 at 290.486 kb on + strand, within PGA1_c03020 at 290.572 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.591 kb on - strand, within PGA1_c03020 at 290.734 kb on + strand, within PGA1_c03020 at 290.908 kb on - strand, within PGA1_c03020 at 290.924 kb on - strand, within PGA1_c03020 at 291.003 kb on + strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.094 kb on + strand, within PGA1_c03020 at 291.100 kb on + strand, within PGA1_c03020 at 291.118 kb on - strand, within PGA1_c03020 at 291.157 kb on + strand, within PGA1_c03020 at 291.165 kb on - strand, within PGA1_c03020 at 291.228 kb on + strand at 291.236 kb on - strand at 291.248 kb on + strand at 291.256 kb on - strand at 291.313 kb on - strand at 291.313 kb on - strand at 291.317 kb on + strand at 291.344 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.370 kb on + strand at 291.374 kb on - strand at 291.425 kb on + strand, within PGA1_c03030 at 291.433 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.511 kb on - strand, within PGA1_c03030 at 291.515 kb on + strand, within PGA1_c03030 at 291.523 kb on - strand, within PGA1_c03030 at 291.528 kb on + strand, within PGA1_c03030 at 291.576 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.624 kb on - strand, within PGA1_c03030 at 291.650 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.720 kb on + strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.731 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.784 kb on + strand, within PGA1_c03030 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 289,013 - PGA1_c03000 0.76 +0.0 289,014 - PGA1_c03000 0.76 +0.7 289,036 - PGA1_c03000 0.80 +1.7 289,065 + PGA1_c03000 0.86 +0.5 289,065 + PGA1_c03000 0.86 -1.3 289,070 + PGA1_c03000 0.88 -1.6 289,073 - PGA1_c03000 0.88 +0.1 289,073 - PGA1_c03000 0.88 +1.3 289,073 - PGA1_c03000 0.88 -0.6 289,088 - -0.6 289,097 + -0.8 289,130 + -0.0 289,131 + -0.4 289,138 - -0.7 289,139 - +0.2 289,158 - +0.3 289,169 + -0.3 289,169 + -0.2 289,194 - +0.3 289,233 - -0.2 289,243 - +0.7 289,278 + -0.6 289,333 - -0.3 289,352 - -0.8 289,413 - +0.2 290,017 - -0.9 290,065 - +0.2 290,135 + +1.1 290,135 + +0.7 290,145 + PGA1_c03020 0.10 -0.3 290,180 + PGA1_c03020 0.13 -0.1 290,193 - PGA1_c03020 0.14 +0.7 290,198 - PGA1_c03020 0.14 +1.4 290,306 - PGA1_c03020 0.22 +0.4 290,336 + PGA1_c03020 0.25 -0.9 290,379 - PGA1_c03020 0.28 +0.6 290,409 + PGA1_c03020 0.30 +0.2 290,417 - PGA1_c03020 0.31 +1.4 290,417 - PGA1_c03020 0.31 +1.0 290,437 - PGA1_c03020 0.32 +1.4 290,452 + PGA1_c03020 0.34 -0.8 290,467 + PGA1_c03020 0.35 -0.0 290,486 + PGA1_c03020 0.36 -0.3 290,572 + PGA1_c03020 0.43 +0.9 290,583 + PGA1_c03020 0.44 +0.4 290,583 + PGA1_c03020 0.44 -0.8 290,583 + PGA1_c03020 0.44 +0.2 290,591 - PGA1_c03020 0.44 +0.7 290,734 + PGA1_c03020 0.55 +0.7 290,908 - PGA1_c03020 0.68 +0.2 290,924 - PGA1_c03020 0.70 +1.7 291,003 + PGA1_c03020 0.76 -0.1 291,013 - PGA1_c03020 0.76 +0.8 291,013 - PGA1_c03020 0.76 +0.9 291,093 + PGA1_c03020 0.82 +0.1 291,093 + PGA1_c03020 0.82 +0.3 291,094 + PGA1_c03020 0.83 +1.0 291,100 + PGA1_c03020 0.83 -0.9 291,118 - PGA1_c03020 0.84 +0.3 291,157 + PGA1_c03020 0.87 -0.2 291,165 - PGA1_c03020 0.88 +0.1 291,228 + +0.3 291,236 - +0.2 291,248 + +0.1 291,256 - +1.2 291,313 - +2.5 291,313 - -2.3 291,317 + -0.2 291,344 + +0.1 291,349 + -0.8 291,349 + +1.4 291,349 + +1.2 291,349 + +1.3 291,349 + +1.4 291,357 - -0.6 291,357 - +1.3 291,357 - -1.2 291,357 - +1.6 291,357 - -0.6 291,357 - +0.1 291,357 - +0.2 291,357 - +0.5 291,357 - -0.0 291,357 - -0.0 291,370 + +0.4 291,374 - -0.5 291,425 + PGA1_c03030 0.18 +0.2 291,433 - PGA1_c03030 0.20 +1.5 291,487 - PGA1_c03030 0.30 -0.4 291,487 - PGA1_c03030 0.30 +0.7 291,511 - PGA1_c03030 0.34 -0.4 291,515 + PGA1_c03030 0.35 -0.0 291,523 - PGA1_c03030 0.37 -0.5 291,528 + PGA1_c03030 0.37 -0.5 291,576 + PGA1_c03030 0.46 +1.5 291,616 + PGA1_c03030 0.54 -0.6 291,616 + PGA1_c03030 0.54 -0.6 291,624 - PGA1_c03030 0.55 -1.1 291,650 + PGA1_c03030 0.60 -1.4 291,710 + PGA1_c03030 0.72 +1.0 291,710 + PGA1_c03030 0.72 +0.7 291,710 + PGA1_c03030 0.72 -0.1 291,710 + PGA1_c03030 0.72 +1.8 291,710 + PGA1_c03030 0.72 +0.3 291,710 + PGA1_c03030 0.72 +0.5 291,710 + PGA1_c03030 0.72 +0.1 291,710 + PGA1_c03030 0.72 +0.9 291,710 + PGA1_c03030 0.72 +0.0 291,710 + PGA1_c03030 0.72 +1.1 291,710 + PGA1_c03030 0.72 +0.8 291,718 - PGA1_c03030 0.73 -1.6 291,718 - PGA1_c03030 0.73 -0.7 291,718 - PGA1_c03030 0.73 +0.1 291,718 - PGA1_c03030 0.73 -0.5 291,718 - PGA1_c03030 0.73 -0.8 291,718 - PGA1_c03030 0.73 +0.3 291,720 + PGA1_c03030 0.73 -1.5 291,728 - PGA1_c03030 0.75 +0.6 291,728 - PGA1_c03030 0.75 -0.3 291,731 + PGA1_c03030 0.75 -0.3 291,752 + PGA1_c03030 0.79 -0.0 291,752 + PGA1_c03030 0.79 -0.0 291,752 + PGA1_c03030 0.79 +0.2 291,752 + PGA1_c03030 0.79 -0.0 291,752 + PGA1_c03030 0.79 +0.9 291,752 + PGA1_c03030 0.79 -0.2 291,760 - PGA1_c03030 0.81 +1.1 291,760 - PGA1_c03030 0.81 +0.4 291,760 - PGA1_c03030 0.81 +0.9 291,760 - PGA1_c03030 0.81 -1.0 291,760 - PGA1_c03030 0.81 +1.1 291,760 - PGA1_c03030 0.81 +0.5 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 -0.3 291,760 - PGA1_c03030 0.81 -0.4 291,760 - PGA1_c03030 0.81 -0.0 291,760 - PGA1_c03030 0.81 +0.7 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 +1.0 291,760 - PGA1_c03030 0.81 -0.2 291,762 + PGA1_c03030 0.81 +0.6 291,762 + PGA1_c03030 0.81 -0.8 291,762 + PGA1_c03030 0.81 +0.2 291,762 + PGA1_c03030 0.81 -2.9 291,762 + PGA1_c03030 0.81 +0.7 291,762 + PGA1_c03030 0.81 -0.8 291,762 + PGA1_c03030 0.81 -0.4 291,762 + PGA1_c03030 0.81 -0.9 291,770 - PGA1_c03030 0.83 +0.4 291,770 - PGA1_c03030 0.83 +0.3 291,770 - PGA1_c03030 0.83 +0.4 291,770 - PGA1_c03030 0.83 +0.6 291,770 - PGA1_c03030 0.83 -0.9 291,770 - PGA1_c03030 0.83 -1.0 291,772 + PGA1_c03030 0.83 +0.3 291,772 + PGA1_c03030 0.83 +0.3 291,780 - PGA1_c03030 0.85 +1.2 291,780 - PGA1_c03030 0.85 -0.0 291,784 + PGA1_c03030 0.85 +0.3 291,806 - PGA1_c03030 0.90 +0.0 291,825 + -1.2 291,851 + +0.4 291,851 + +0.1 291,851 + +0.2 291,856 + +0.9 291,856 + +0.4 291,856 + -1.0 291,856 + -0.5 291,856 + -0.1 291,856 + +1.1 291,859 - -1.0 291,859 - +0.6 291,863 + -0.9 291,864 - -2.1 291,864 - +0.5 291,864 - +1.7 291,864 - -0.0 291,864 - +0.5 291,864 - -1.2 291,864 - +0.5 291,864 - -0.6 291,864 - +0.6 291,864 - -1.8 291,893 + +0.1 291,898 + PGA1_c03040 0.10 -1.4 291,898 + PGA1_c03040 0.10 -1.0 291,906 - PGA1_c03040 0.12 -0.1 291,918 - PGA1_c03040 0.16 -0.0 291,924 + PGA1_c03040 0.17 +0.1 291,932 + PGA1_c03040 0.19 +0.4 291,940 - PGA1_c03040 0.21 -0.0 291,963 - PGA1_c03040 0.27 +0.0 291,968 - PGA1_c03040 0.29 -0.3 292,007 - PGA1_c03040 0.39 +0.3 292,063 + PGA1_c03040 0.53 +0.0 292,093 - PGA1_c03040 0.61 +0.4 292,093 - PGA1_c03040 0.61 -2.8 292,117 + PGA1_c03040 0.67 -0.1 292,117 + PGA1_c03040 0.67 +1.0 292,183 + PGA1_c03040 0.85 +0.2 292,214 + +0.9 292,239 - +1.0 292,273 + +0.7 292,276 - +0.9 292,276 - +1.3
Or see this region's nucleotide sequence