Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26800 and PGA1_c26810 are separated by 15 nucleotides PGA1_c26810 and PGA1_c26820 are separated by 2 nucleotides PGA1_c26820 and PGA1_c26830 are separated by 126 nucleotides
PGA1_c26800: PGA1_c26800 - phenylacetate-CoA ligase PaaK, at 2,796,763 to 2,798,073
_c26800
PGA1_c26810: PGA1_c26810 - phenylacetic acid degradation protein PaaI, at 2,798,089 to 2,798,514
_c26810
PGA1_c26820: PGA1_c26820 - probable enoyl-CoA hydratase PaaG, at 2,798,517 to 2,799,302
_c26820
PGA1_c26830: PGA1_c26830 - phenylacetic acid degradation protein PaaZ, at 2,799,429 to 2,801,459
_c26830
Position (kb)
2798
2799
2800 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2797.543 kb on + strand, within PGA1_c26800 at 2797.631 kb on - strand, within PGA1_c26800 at 2797.631 kb on - strand, within PGA1_c26800 at 2797.644 kb on + strand, within PGA1_c26800 at 2797.658 kb on + strand, within PGA1_c26800 at 2797.686 kb on + strand, within PGA1_c26800 at 2797.686 kb on + strand, within PGA1_c26800 at 2797.686 kb on + strand, within PGA1_c26800 at 2797.686 kb on + strand, within PGA1_c26800 at 2797.686 kb on + strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.694 kb on - strand, within PGA1_c26800 at 2797.753 kb on - strand, within PGA1_c26800 at 2797.835 kb on + strand, within PGA1_c26800 at 2797.896 kb on + strand, within PGA1_c26800 at 2797.957 kb on + strand at 2797.995 kb on + strand at 2798.003 kb on - strand at 2798.003 kb on - strand at 2798.042 kb on + strand at 2798.057 kb on + strand at 2798.060 kb on - strand at 2798.060 kb on - strand at 2798.060 kb on - strand at 2798.088 kb on - strand at 2798.144 kb on + strand, within PGA1_c26810 at 2798.163 kb on - strand, within PGA1_c26810 at 2798.277 kb on + strand, within PGA1_c26810 at 2798.324 kb on + strand, within PGA1_c26810 at 2798.334 kb on + strand, within PGA1_c26810 at 2798.342 kb on - strand, within PGA1_c26810 at 2798.342 kb on - strand, within PGA1_c26810 at 2798.342 kb on - strand, within PGA1_c26810 at 2798.369 kb on + strand, within PGA1_c26810 at 2798.397 kb on + strand, within PGA1_c26810 at 2798.520 kb on - strand at 2798.525 kb on - strand at 2798.603 kb on - strand, within PGA1_c26820 at 2798.617 kb on + strand, within PGA1_c26820 at 2798.681 kb on + strand, within PGA1_c26820 at 2798.681 kb on + strand, within PGA1_c26820 at 2798.681 kb on + strand, within PGA1_c26820 at 2798.689 kb on - strand, within PGA1_c26820 at 2798.689 kb on - strand, within PGA1_c26820 at 2798.689 kb on - strand, within PGA1_c26820 at 2798.689 kb on - strand, within PGA1_c26820 at 2798.724 kb on + strand, within PGA1_c26820 at 2798.732 kb on - strand, within PGA1_c26820 at 2798.775 kb on + strand, within PGA1_c26820 at 2798.801 kb on + strand, within PGA1_c26820 at 2798.809 kb on - strand, within PGA1_c26820 at 2798.944 kb on - strand, within PGA1_c26820 at 2798.949 kb on - strand, within PGA1_c26820 at 2799.236 kb on + strand at 2799.246 kb on + strand at 2799.246 kb on + strand at 2799.254 kb on - strand at 2799.263 kb on + strand at 2799.271 kb on - strand at 2799.294 kb on + strand at 2799.313 kb on + strand at 2799.400 kb on + strand at 2799.444 kb on + strand at 2799.494 kb on - strand at 2799.560 kb on + strand at 2799.650 kb on - strand, within PGA1_c26830 at 2799.970 kb on + strand at 2800.083 kb on - strand, within PGA1_c26830 at 2800.094 kb on - strand, within PGA1_c26830 at 2800.120 kb on + strand, within PGA1_c26830 at 2800.200 kb on + strand, within PGA1_c26830 at 2800.200 kb on + strand, within PGA1_c26830 at 2800.208 kb on - strand, within PGA1_c26830 at 2800.250 kb on - strand, within PGA1_c26830
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,797,543 + PGA1_c26800 0.59 +0.5 2,797,631 - PGA1_c26800 0.66 -0.3 2,797,631 - PGA1_c26800 0.66 +0.5 2,797,644 + PGA1_c26800 0.67 -1.9 2,797,658 + PGA1_c26800 0.68 +0.0 2,797,686 + PGA1_c26800 0.70 -0.4 2,797,686 + PGA1_c26800 0.70 -0.3 2,797,686 + PGA1_c26800 0.70 -0.1 2,797,686 + PGA1_c26800 0.70 +0.3 2,797,686 + PGA1_c26800 0.70 +0.4 2,797,694 - PGA1_c26800 0.71 +0.0 2,797,694 - PGA1_c26800 0.71 -1.3 2,797,694 - PGA1_c26800 0.71 +0.1 2,797,694 - PGA1_c26800 0.71 -0.0 2,797,694 - PGA1_c26800 0.71 -0.4 2,797,694 - PGA1_c26800 0.71 +0.1 2,797,694 - PGA1_c26800 0.71 +0.0 2,797,694 - PGA1_c26800 0.71 +0.4 2,797,753 - PGA1_c26800 0.76 +0.4 2,797,835 + PGA1_c26800 0.82 +0.0 2,797,896 + PGA1_c26800 0.86 +1.7 2,797,957 + -0.4 2,797,995 + -0.5 2,798,003 - +0.3 2,798,003 - +0.3 2,798,042 + -0.3 2,798,057 + -1.2 2,798,060 - -0.3 2,798,060 - -0.6 2,798,060 - +0.3 2,798,088 - +1.2 2,798,144 + PGA1_c26810 0.13 -1.2 2,798,163 - PGA1_c26810 0.17 -0.1 2,798,277 + PGA1_c26810 0.44 +1.2 2,798,324 + PGA1_c26810 0.55 +0.2 2,798,334 + PGA1_c26810 0.58 -0.4 2,798,342 - PGA1_c26810 0.59 +0.5 2,798,342 - PGA1_c26810 0.59 +1.1 2,798,342 - PGA1_c26810 0.59 -0.2 2,798,369 + PGA1_c26810 0.66 -0.7 2,798,397 + PGA1_c26810 0.72 -0.4 2,798,520 - +0.3 2,798,525 - -0.6 2,798,603 - PGA1_c26820 0.11 -0.7 2,798,617 + PGA1_c26820 0.13 +0.6 2,798,681 + PGA1_c26820 0.21 +0.1 2,798,681 + PGA1_c26820 0.21 -0.8 2,798,681 + PGA1_c26820 0.21 -0.8 2,798,689 - PGA1_c26820 0.22 -0.2 2,798,689 - PGA1_c26820 0.22 +0.4 2,798,689 - PGA1_c26820 0.22 -0.5 2,798,689 - PGA1_c26820 0.22 -0.8 2,798,724 + PGA1_c26820 0.26 +0.2 2,798,732 - PGA1_c26820 0.27 -0.3 2,798,775 + PGA1_c26820 0.33 +0.4 2,798,801 + PGA1_c26820 0.36 -0.2 2,798,809 - PGA1_c26820 0.37 +0.1 2,798,944 - PGA1_c26820 0.54 +0.0 2,798,949 - PGA1_c26820 0.55 -1.7 2,799,236 + -1.1 2,799,246 + -1.2 2,799,246 + +1.0 2,799,254 - -0.1 2,799,263 + -0.1 2,799,271 - +1.8 2,799,294 + +1.3 2,799,313 + +0.8 2,799,400 + +0.0 2,799,444 + +0.4 2,799,494 - -1.5 2,799,560 + -0.2 2,799,650 - PGA1_c26830 0.11 -0.1 2,799,970 + +0.0 2,800,083 - PGA1_c26830 0.32 -0.3 2,800,094 - PGA1_c26830 0.33 +0.9 2,800,120 + PGA1_c26830 0.34 +0.4 2,800,200 + PGA1_c26830 0.38 +0.5 2,800,200 + PGA1_c26830 0.38 +0.5 2,800,208 - PGA1_c26830 0.38 -0.2 2,800,250 - PGA1_c26830 0.40 +0.3
Or see this region's nucleotide sequence