Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19010

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c19000 and PGA1_c19010 are separated by 66 nucleotidesPGA1_c19010 and PGA1_c19030 are separated by 297 nucleotides PGA1_c19000: PGA1_c19000 - putative quinoprotein, at 1,971,405 to 1,972,727 _c19000 PGA1_c19010: PGA1_c19010 - Uncharacterized protein conserved in bacteria, at 1,972,794 to 1,973,465 _c19010 PGA1_c19030: PGA1_c19030 - putative efflux transporter, RND family, MFP subunit, at 1,973,763 to 1,975,055 _c19030 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1972.732 kb on - strandat 1972.732 kb on - strandat 1972.876 kb on - strand, within PGA1_c19010at 1972.927 kb on + strand, within PGA1_c19010at 1972.935 kb on - strand, within PGA1_c19010at 1972.935 kb on - strand, within PGA1_c19010at 1972.967 kb on - strand, within PGA1_c19010at 1973.048 kb on + strand, within PGA1_c19010at 1973.211 kb on - strand, within PGA1_c19010at 1973.270 kb on - strand, within PGA1_c19010at 1973.423 kb on + strandat 1973.449 kb on - strandat 1973.564 kb on - strandat 1973.572 kb on + strandat 1973.620 kb on + strandat 1973.716 kb on + strandat 1973.716 kb on + strandat 1973.724 kb on - strandat 1973.725 kb on - strandat 1973.753 kb on - strandat 1973.753 kb on - strandat 1973.755 kb on + strandat 1973.765 kb on - strandat 1973.775 kb on - strandat 1973.793 kb on - strandat 1973.805 kb on + strandat 1973.808 kb on - strandat 1973.810 kb on + strandat 1973.810 kb on + strandat 1973.813 kb on - strandat 1973.818 kb on - strandat 1973.872 kb on - strandat 1973.872 kb on - strandat 1973.884 kb on + strandat 1973.892 kb on - strandat 1973.949 kb on - strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.008 kb on - strand, within PGA1_c19030at 1974.013 kb on - strand, within PGA1_c19030at 1974.034 kb on + strand, within PGA1_c19030at 1974.044 kb on - strand, within PGA1_c19030at 1974.071 kb on + strand, within PGA1_c19030at 1974.097 kb on + strand, within PGA1_c19030at 1974.102 kb on - strand, within PGA1_c19030at 1974.115 kb on - strand, within PGA1_c19030at 1974.127 kb on - strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.142 kb on - strand, within PGA1_c19030at 1974.142 kb on - strand, within PGA1_c19030at 1974.181 kb on + strand, within PGA1_c19030at 1974.197 kb on + strand, within PGA1_c19030at 1974.272 kb on + strand, within PGA1_c19030at 1974.272 kb on + strand, within PGA1_c19030at 1974.280 kb on - strand, within PGA1_c19030at 1974.355 kb on - strand, within PGA1_c19030at 1974.378 kb on - strand, within PGA1_c19030at 1974.404 kb on - strand, within PGA1_c19030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
1,972,732 - -1.9
1,972,732 - -0.1
1,972,876 - PGA1_c19010 0.12 +0.9
1,972,927 + PGA1_c19010 0.20 -1.9
1,972,935 - PGA1_c19010 0.21 -0.1
1,972,935 - PGA1_c19010 0.21 -1.3
1,972,967 - PGA1_c19010 0.26 -1.0
1,973,048 + PGA1_c19010 0.38 -2.6
1,973,211 - PGA1_c19010 0.62 -0.7
1,973,270 - PGA1_c19010 0.71 -0.8
1,973,423 + -1.6
1,973,449 - -0.1
1,973,564 - -3.1
1,973,572 + -1.2
1,973,620 + -2.3
1,973,716 + -2.1
1,973,716 + -4.3
1,973,724 - -2.1
1,973,725 - -4.0
1,973,753 - -0.6
1,973,753 - -3.5
1,973,755 + -2.7
1,973,765 - -3.4
1,973,775 - -1.9
1,973,793 - -2.1
1,973,805 + -1.9
1,973,808 - -3.3
1,973,810 + -2.6
1,973,810 + -1.4
1,973,813 - -1.1
1,973,818 - -2.9
1,973,872 - -1.6
1,973,872 - -1.6
1,973,884 + -2.1
1,973,892 - -3.3
1,973,949 - PGA1_c19030 0.14 -4.1
1,974,005 + PGA1_c19030 0.19 -3.4
1,974,005 + PGA1_c19030 0.19 -1.7
1,974,005 + PGA1_c19030 0.19 -3.6
1,974,005 + PGA1_c19030 0.19 -1.1
1,974,008 - PGA1_c19030 0.19 -3.6
1,974,013 - PGA1_c19030 0.19 -1.4
1,974,034 + PGA1_c19030 0.21 -2.1
1,974,044 - PGA1_c19030 0.22 -1.6
1,974,071 + PGA1_c19030 0.24 -3.1
1,974,097 + PGA1_c19030 0.26 -1.8
1,974,102 - PGA1_c19030 0.26 -1.0
1,974,115 - PGA1_c19030 0.27 -1.9
1,974,127 - PGA1_c19030 0.28 +0.4
1,974,134 + PGA1_c19030 0.29 -2.4
1,974,134 + PGA1_c19030 0.29 -0.6
1,974,134 + PGA1_c19030 0.29 -3.8
1,974,134 + PGA1_c19030 0.29 -3.0
1,974,134 + PGA1_c19030 0.29 -1.5
1,974,142 - PGA1_c19030 0.29 -2.9
1,974,142 - PGA1_c19030 0.29 -3.8
1,974,181 + PGA1_c19030 0.32 +0.2
1,974,197 + PGA1_c19030 0.34 -0.6
1,974,272 + PGA1_c19030 0.39 -2.6
1,974,272 + PGA1_c19030 0.39 -2.9
1,974,280 - PGA1_c19030 0.40 -2.1
1,974,355 - PGA1_c19030 0.46 -3.1
1,974,378 - PGA1_c19030 0.48 -2.6
1,974,404 - PGA1_c19030 0.50 -3.6

Or see this region's nucleotide sequence