Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17560 and PGA1_c17570 are separated by 12 nucleotides PGA1_c17570 and PGA1_c17580 are separated by 298 nucleotides
PGA1_c17560: PGA1_c17560 - pyruvate dehydrogenase E1 component subunit beta, at 1,840,518 to 1,841,903
_c17560
PGA1_c17570: PGA1_c17570 - dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 1,841,916 to 1,843,241
_c17570
PGA1_c17580: PGA1_c17580 - hypothetical protein, at 1,843,540 to 1,845,012
_c17580
Position (kb)
1841
1842
1843
1844 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1843.235 kb on + strand at 1843.235 kb on + strand at 1843.267 kb on - strand at 1843.288 kb on + strand at 1843.323 kb on - strand at 1843.334 kb on - strand at 1843.471 kb on - strand at 1843.473 kb on + strand at 1843.481 kb on - strand at 1843.504 kb on - strand at 1843.517 kb on + strand at 1843.568 kb on + strand at 1843.573 kb on + strand at 1843.573 kb on - strand at 1843.658 kb on + strand at 1843.667 kb on - strand at 1843.667 kb on - strand at 1843.667 kb on - strand at 1843.717 kb on + strand, within PGA1_c17580 at 1843.761 kb on - strand, within PGA1_c17580 at 1843.786 kb on + strand, within PGA1_c17580 at 1843.836 kb on + strand, within PGA1_c17580 at 1843.839 kb on - strand, within PGA1_c17580 at 1843.844 kb on - strand, within PGA1_c17580 at 1843.844 kb on - strand, within PGA1_c17580 at 1843.844 kb on - strand, within PGA1_c17580 at 1843.860 kb on + strand, within PGA1_c17580 at 1843.860 kb on + strand, within PGA1_c17580 at 1843.860 kb on + strand, within PGA1_c17580 at 1843.860 kb on + strand, within PGA1_c17580 at 1843.860 kb on + strand, within PGA1_c17580 at 1843.868 kb on - strand, within PGA1_c17580 at 1843.911 kb on + strand, within PGA1_c17580 at 1843.911 kb on + strand, within PGA1_c17580 at 1843.918 kb on + strand, within PGA1_c17580 at 1843.919 kb on + strand, within PGA1_c17580 at 1843.973 kb on - strand, within PGA1_c17580 at 1844.098 kb on + strand, within PGA1_c17580 at 1844.157 kb on + strand, within PGA1_c17580 at 1844.162 kb on + strand, within PGA1_c17580 at 1844.170 kb on - strand, within PGA1_c17580 at 1844.176 kb on - strand, within PGA1_c17580 at 1844.176 kb on - strand, within PGA1_c17580 at 1844.186 kb on - strand, within PGA1_c17580 at 1844.186 kb on - strand, within PGA1_c17580
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,843,235 + +0.4 1,843,235 + -0.4 1,843,267 - +0.2 1,843,288 + +0.1 1,843,323 - +0.0 1,843,334 - +0.7 1,843,471 - +0.2 1,843,473 + +0.2 1,843,481 - -1.4 1,843,504 - +0.2 1,843,517 + -0.4 1,843,568 + -0.6 1,843,573 + +0.8 1,843,573 - -0.1 1,843,658 + -0.3 1,843,667 - +2.4 1,843,667 - +0.2 1,843,667 - +0.1 1,843,717 + PGA1_c17580 0.12 +0.9 1,843,761 - PGA1_c17580 0.15 +0.4 1,843,786 + PGA1_c17580 0.17 -0.2 1,843,836 + PGA1_c17580 0.20 +1.3 1,843,839 - PGA1_c17580 0.20 +0.9 1,843,844 - PGA1_c17580 0.21 -1.0 1,843,844 - PGA1_c17580 0.21 +0.4 1,843,844 - PGA1_c17580 0.21 +0.2 1,843,860 + PGA1_c17580 0.22 +0.2 1,843,860 + PGA1_c17580 0.22 -0.4 1,843,860 + PGA1_c17580 0.22 -0.6 1,843,860 + PGA1_c17580 0.22 +0.2 1,843,860 + PGA1_c17580 0.22 +1.0 1,843,868 - PGA1_c17580 0.22 +0.1 1,843,911 + PGA1_c17580 0.25 +0.6 1,843,911 + PGA1_c17580 0.25 -1.9 1,843,918 + PGA1_c17580 0.26 -0.6 1,843,919 + PGA1_c17580 0.26 -0.8 1,843,973 - PGA1_c17580 0.29 +1.3 1,844,098 + PGA1_c17580 0.38 -0.1 1,844,157 + PGA1_c17580 0.42 +2.4 1,844,162 + PGA1_c17580 0.42 +0.4 1,844,170 - PGA1_c17580 0.43 -0.2 1,844,176 - PGA1_c17580 0.43 +0.4 1,844,176 - PGA1_c17580 0.43 -0.7 1,844,186 - PGA1_c17580 0.44 +0.0 1,844,186 - PGA1_c17580 0.44 +0.9
Or see this region's nucleotide sequence