Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17510 and PGA1_c17520 overlap by 8 nucleotides PGA1_c17520 and PGA1_c17530 are separated by 181 nucleotides PGA1_c17530 and PGA1_c17540 are separated by 256 nucleotides PGA1_c17540 and PGA1_c17550 are separated by 302 nucleotides
PGA1_c17510: PGA1_c17510 - putative peptidyl-prolyl cis-trans isomerases (cyclophilin), at 1,836,207 to 1,836,758
_c17510
PGA1_c17520: PGA1_c17520 - putative peptidyl-prolyl cis-trans isomerase A, at 1,836,751 to 1,837,257
_c17520
PGA1_c17530: PGA1_c17530 - phosphoglycerate kinase Pgk, at 1,837,439 to 1,838,629
_c17530
PGA1_c17540: PGA1_c17540 - septum formation initiator-like protein, at 1,838,886 to 1,839,185
_c17540
PGA1_c17550: PGA1_c17550 - pyruvate dehydrogenase E1 component subunit alpha, at 1,839,488 to 1,840,501
_c17550
Position (kb) 1837
1838
1839 Strain fitness (log2 ratio) -1
0
1 at 1836.473 kb on + strand, within PGA1_c17510 at 1836.491 kb on - strand, within PGA1_c17510 at 1836.532 kb on + strand, within PGA1_c17510 at 1836.567 kb on + strand, within PGA1_c17510 at 1836.575 kb on - strand, within PGA1_c17510 at 1836.615 kb on - strand, within PGA1_c17510 at 1836.615 kb on - strand, within PGA1_c17510 at 1836.615 kb on - strand, within PGA1_c17510 at 1836.703 kb on + strand at 1836.721 kb on - strand at 1836.768 kb on + strand at 1836.853 kb on + strand, within PGA1_c17520 at 1836.853 kb on + strand, within PGA1_c17520 at 1836.853 kb on + strand, within PGA1_c17520 at 1836.853 kb on + strand, within PGA1_c17520 at 1836.853 kb on + strand, within PGA1_c17520 at 1836.853 kb on + strand, within PGA1_c17520 at 1836.853 kb on + strand, within PGA1_c17520 at 1836.860 kb on + strand, within PGA1_c17520 at 1836.861 kb on - strand, within PGA1_c17520 at 1836.861 kb on - strand, within PGA1_c17520 at 1836.861 kb on - strand, within PGA1_c17520 at 1837.005 kb on + strand, within PGA1_c17520 at 1837.005 kb on + strand, within PGA1_c17520 at 1837.035 kb on + strand, within PGA1_c17520 at 1837.162 kb on + strand, within PGA1_c17520 at 1837.162 kb on + strand, within PGA1_c17520 at 1837.162 kb on + strand, within PGA1_c17520 at 1837.162 kb on + strand, within PGA1_c17520 at 1837.170 kb on - strand, within PGA1_c17520 at 1837.170 kb on - strand, within PGA1_c17520 at 1837.170 kb on - strand, within PGA1_c17520 at 1837.175 kb on + strand, within PGA1_c17520 at 1837.261 kb on - strand at 1837.264 kb on + strand at 1837.266 kb on + strand at 1837.272 kb on - strand at 1837.298 kb on - strand at 1837.298 kb on - strand at 1837.298 kb on - strand at 1837.329 kb on - strand at 1838.678 kb on + strand at 1838.678 kb on + strand at 1838.743 kb on + strand at 1839.188 kb on + strand at 1839.314 kb on - strand at 1839.354 kb on - strand at 1839.361 kb on - strand at 1839.377 kb on + strand at 1839.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,836,473 + PGA1_c17510 0.48 +0.3 1,836,491 - PGA1_c17510 0.51 -0.2 1,836,532 + PGA1_c17510 0.59 -0.7 1,836,567 + PGA1_c17510 0.65 -0.2 1,836,575 - PGA1_c17510 0.67 +0.9 1,836,615 - PGA1_c17510 0.74 +0.1 1,836,615 - PGA1_c17510 0.74 +0.4 1,836,615 - PGA1_c17510 0.74 +0.4 1,836,703 + +0.9 1,836,721 - +0.4 1,836,768 + +0.8 1,836,853 + PGA1_c17520 0.20 -1.7 1,836,853 + PGA1_c17520 0.20 +0.7 1,836,853 + PGA1_c17520 0.20 -0.6 1,836,853 + PGA1_c17520 0.20 -0.4 1,836,853 + PGA1_c17520 0.20 -1.0 1,836,853 + PGA1_c17520 0.20 +0.2 1,836,853 + PGA1_c17520 0.20 +0.9 1,836,860 + PGA1_c17520 0.21 +1.3 1,836,861 - PGA1_c17520 0.22 -0.4 1,836,861 - PGA1_c17520 0.22 +0.8 1,836,861 - PGA1_c17520 0.22 +0.6 1,837,005 + PGA1_c17520 0.50 +0.4 1,837,005 + PGA1_c17520 0.50 -0.8 1,837,035 + PGA1_c17520 0.56 -0.2 1,837,162 + PGA1_c17520 0.81 -0.8 1,837,162 + PGA1_c17520 0.81 +0.4 1,837,162 + PGA1_c17520 0.81 +0.1 1,837,162 + PGA1_c17520 0.81 +1.5 1,837,170 - PGA1_c17520 0.83 -0.3 1,837,170 - PGA1_c17520 0.83 -0.1 1,837,170 - PGA1_c17520 0.83 +0.2 1,837,175 + PGA1_c17520 0.84 -0.6 1,837,261 - +0.6 1,837,264 + +0.8 1,837,266 + -0.1 1,837,272 - -0.7 1,837,298 - -0.5 1,837,298 - -0.4 1,837,298 - +0.1 1,837,329 - -0.6 1,838,678 + +0.3 1,838,678 + -0.6 1,838,743 + -1.1 1,839,188 + +0.3 1,839,314 - -0.2 1,839,354 - -1.0 1,839,361 - -0.6 1,839,377 + -0.2 1,839,394 - -0.6
Or see this region's nucleotide sequence