Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16280 and PGA1_c16290 overlap by 4 nucleotides PGA1_c16290 and PGA1_c16300 overlap by 4 nucleotides PGA1_c16300 and PGA1_c16310 overlap by 1 nucleotides PGA1_c16310 and PGA1_c16320 are separated by 98 nucleotides
PGA1_c16280: PGA1_c16280 - putative dipeptide transport system permease protein, at 1,690,597 to 1,691,655
_c16280
PGA1_c16290: PGA1_c16290 - dipeptide transport system permease protein DppC, at 1,691,652 to 1,692,587
_c16290
PGA1_c16300: PGA1_c16300 - dipeptide transport ATP-binding protein DppD, at 1,692,584 to 1,693,438
_c16300
PGA1_c16310: PGA1_c16310 - oligopeptide /dipeptide transport ATP-binding protein, at 1,693,438 to 1,694,193
_c16310
PGA1_c16320: PGA1_c16320 - putative metal dependent phosphohydrolase, at 1,694,292 to 1,695,770
_c16320
Position (kb)
1692
1693
1694 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1691.586 kb on - strand at 1691.590 kb on + strand at 1691.590 kb on + strand at 1691.590 kb on + strand at 1691.683 kb on + strand at 1691.690 kb on - strand at 1691.710 kb on - strand at 1691.710 kb on - strand at 1691.772 kb on - strand, within PGA1_c16290 at 1691.783 kb on + strand, within PGA1_c16290 at 1691.794 kb on + strand, within PGA1_c16290 at 1691.802 kb on - strand, within PGA1_c16290 at 1691.863 kb on + strand, within PGA1_c16290 at 1691.949 kb on + strand, within PGA1_c16290 at 1691.957 kb on - strand, within PGA1_c16290 at 1692.045 kb on + strand, within PGA1_c16290 at 1692.045 kb on + strand, within PGA1_c16290 at 1692.053 kb on - strand, within PGA1_c16290 at 1692.053 kb on - strand, within PGA1_c16290 at 1692.053 kb on - strand, within PGA1_c16290 at 1692.065 kb on - strand, within PGA1_c16290 at 1692.122 kb on + strand, within PGA1_c16290 at 1692.137 kb on - strand, within PGA1_c16290 at 1692.260 kb on - strand, within PGA1_c16290 at 1692.280 kb on + strand, within PGA1_c16290 at 1692.285 kb on + strand, within PGA1_c16290 at 1692.331 kb on - strand, within PGA1_c16290 at 1692.356 kb on + strand, within PGA1_c16290 at 1692.360 kb on - strand, within PGA1_c16290 at 1692.364 kb on - strand, within PGA1_c16290 at 1692.375 kb on - strand, within PGA1_c16290 at 1692.405 kb on - strand, within PGA1_c16290 at 1692.414 kb on + strand, within PGA1_c16290 at 1692.424 kb on + strand, within PGA1_c16290 at 1692.424 kb on + strand, within PGA1_c16290 at 1692.432 kb on - strand, within PGA1_c16290 at 1692.432 kb on - strand, within PGA1_c16290 at 1692.525 kb on + strand at 1692.536 kb on + strand at 1692.617 kb on - strand at 1692.624 kb on + strand at 1692.641 kb on + strand at 1692.681 kb on - strand, within PGA1_c16300 at 1692.688 kb on + strand, within PGA1_c16300 at 1692.855 kb on + strand, within PGA1_c16300 at 1692.932 kb on + strand, within PGA1_c16300 at 1692.955 kb on + strand, within PGA1_c16300 at 1692.955 kb on + strand, within PGA1_c16300 at 1692.956 kb on + strand, within PGA1_c16300 at 1692.964 kb on - strand, within PGA1_c16300 at 1692.970 kb on - strand, within PGA1_c16300 at 1692.975 kb on - strand, within PGA1_c16300 at 1692.995 kb on + strand, within PGA1_c16300 at 1693.018 kb on + strand, within PGA1_c16300 at 1693.053 kb on + strand, within PGA1_c16300 at 1693.053 kb on + strand, within PGA1_c16300 at 1693.152 kb on + strand, within PGA1_c16300 at 1693.153 kb on - strand, within PGA1_c16300 at 1693.194 kb on + strand, within PGA1_c16300 at 1693.194 kb on + strand, within PGA1_c16300 at 1693.207 kb on - strand, within PGA1_c16300 at 1693.229 kb on - strand, within PGA1_c16300 at 1693.280 kb on + strand, within PGA1_c16300 at 1693.306 kb on + strand, within PGA1_c16300 at 1693.321 kb on + strand, within PGA1_c16300 at 1693.329 kb on - strand, within PGA1_c16300 at 1693.329 kb on - strand, within PGA1_c16300 at 1693.334 kb on - strand, within PGA1_c16300 at 1693.430 kb on + strand at 1693.483 kb on - strand at 1693.544 kb on + strand, within PGA1_c16310 at 1693.544 kb on + strand, within PGA1_c16310 at 1693.658 kb on - strand, within PGA1_c16310 at 1693.662 kb on - strand, within PGA1_c16310 at 1693.677 kb on + strand, within PGA1_c16310 at 1693.677 kb on + strand, within PGA1_c16310 at 1693.715 kb on - strand, within PGA1_c16310 at 1693.804 kb on - strand, within PGA1_c16310 at 1693.827 kb on + strand, within PGA1_c16310 at 1693.912 kb on + strand, within PGA1_c16310 at 1694.068 kb on - strand, within PGA1_c16310 at 1694.114 kb on - strand, within PGA1_c16310 at 1694.130 kb on + strand at 1694.135 kb on + strand at 1694.153 kb on + strand at 1694.187 kb on + strand at 1694.195 kb on - strand at 1694.240 kb on + strand at 1694.248 kb on - strand at 1694.253 kb on + strand at 1694.376 kb on + strand at 1694.386 kb on + strand at 1694.386 kb on + strand at 1694.394 kb on - strand at 1694.394 kb on - strand at 1694.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,691,586 - +0.6 1,691,590 + -0.6 1,691,590 + -2.4 1,691,590 + -1.3 1,691,683 + +0.9 1,691,690 - -0.6 1,691,710 - -0.6 1,691,710 - -0.0 1,691,772 - PGA1_c16290 0.13 +0.8 1,691,783 + PGA1_c16290 0.14 -1.3 1,691,794 + PGA1_c16290 0.15 -0.6 1,691,802 - PGA1_c16290 0.16 -2.3 1,691,863 + PGA1_c16290 0.23 -0.4 1,691,949 + PGA1_c16290 0.32 +0.4 1,691,957 - PGA1_c16290 0.33 +0.0 1,692,045 + PGA1_c16290 0.42 -0.6 1,692,045 + PGA1_c16290 0.42 -0.3 1,692,053 - PGA1_c16290 0.43 +0.2 1,692,053 - PGA1_c16290 0.43 +0.4 1,692,053 - PGA1_c16290 0.43 +1.1 1,692,065 - PGA1_c16290 0.44 -0.8 1,692,122 + PGA1_c16290 0.50 +0.9 1,692,137 - PGA1_c16290 0.52 -0.2 1,692,260 - PGA1_c16290 0.65 -0.3 1,692,280 + PGA1_c16290 0.67 +0.3 1,692,285 + PGA1_c16290 0.68 -1.6 1,692,331 - PGA1_c16290 0.73 -0.8 1,692,356 + PGA1_c16290 0.75 -0.5 1,692,360 - PGA1_c16290 0.76 -0.0 1,692,364 - PGA1_c16290 0.76 +0.1 1,692,375 - PGA1_c16290 0.77 -0.5 1,692,405 - PGA1_c16290 0.80 -0.8 1,692,414 + PGA1_c16290 0.81 +0.4 1,692,424 + PGA1_c16290 0.82 +1.4 1,692,424 + PGA1_c16290 0.82 +0.6 1,692,432 - PGA1_c16290 0.83 +0.4 1,692,432 - PGA1_c16290 0.83 +0.2 1,692,525 + +2.4 1,692,536 + -0.7 1,692,617 - -0.1 1,692,624 + -1.3 1,692,641 + -0.7 1,692,681 - PGA1_c16300 0.11 -2.4 1,692,688 + PGA1_c16300 0.12 +0.1 1,692,855 + PGA1_c16300 0.32 +1.3 1,692,932 + PGA1_c16300 0.41 +0.9 1,692,955 + PGA1_c16300 0.43 +0.0 1,692,955 + PGA1_c16300 0.43 -0.2 1,692,956 + PGA1_c16300 0.44 +1.4 1,692,964 - PGA1_c16300 0.44 +0.7 1,692,970 - PGA1_c16300 0.45 -0.3 1,692,975 - PGA1_c16300 0.46 +0.6 1,692,995 + PGA1_c16300 0.48 +0.2 1,693,018 + PGA1_c16300 0.51 +0.5 1,693,053 + PGA1_c16300 0.55 -0.4 1,693,053 + PGA1_c16300 0.55 -1.1 1,693,152 + PGA1_c16300 0.66 +1.4 1,693,153 - PGA1_c16300 0.67 +1.1 1,693,194 + PGA1_c16300 0.71 +0.7 1,693,194 + PGA1_c16300 0.71 +0.4 1,693,207 - PGA1_c16300 0.73 +0.9 1,693,229 - PGA1_c16300 0.75 +0.2 1,693,280 + PGA1_c16300 0.81 -0.4 1,693,306 + PGA1_c16300 0.84 +0.2 1,693,321 + PGA1_c16300 0.86 -0.6 1,693,329 - PGA1_c16300 0.87 +0.5 1,693,329 - PGA1_c16300 0.87 +2.2 1,693,334 - PGA1_c16300 0.88 -0.0 1,693,430 + -0.0 1,693,483 - -0.1 1,693,544 + PGA1_c16310 0.14 +2.0 1,693,544 + PGA1_c16310 0.14 +0.4 1,693,658 - PGA1_c16310 0.29 +0.4 1,693,662 - PGA1_c16310 0.30 +0.1 1,693,677 + PGA1_c16310 0.32 +0.2 1,693,677 + PGA1_c16310 0.32 -0.8 1,693,715 - PGA1_c16310 0.37 +1.8 1,693,804 - PGA1_c16310 0.48 +0.1 1,693,827 + PGA1_c16310 0.51 +0.1 1,693,912 + PGA1_c16310 0.63 -0.0 1,694,068 - PGA1_c16310 0.83 -0.1 1,694,114 - PGA1_c16310 0.89 +0.1 1,694,130 + +0.4 1,694,135 + -0.5 1,694,153 + +0.7 1,694,187 + +0.4 1,694,195 - +0.3 1,694,240 + +0.3 1,694,248 - +0.1 1,694,253 + -0.6 1,694,376 + +0.1 1,694,386 + +1.8 1,694,386 + -0.2 1,694,394 - +0.0 1,694,394 - +0.7 1,694,400 + -1.3
Or see this region's nucleotide sequence