Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15410

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c15400 and PGA1_c15410 overlap by 1 nucleotidesPGA1_c15410 and PGA1_c15420 overlap by 4 nucleotidesPGA1_c15420 and PGA1_c15430 overlap by 8 nucleotides PGA1_c15400: PGA1_c15400 - protein SufD, at 1,603,610 to 1,604,890 _c15400 PGA1_c15410: PGA1_c15410 - hypothetical protein, at 1,604,890 to 1,605,375 _c15410 PGA1_c15420: PGA1_c15420 - Yip1 domain., at 1,605,372 to 1,605,953 _c15420 PGA1_c15430: PGA1_c15430 - cysteine desulfurase SufS, at 1,605,946 to 1,607,166 _c15430 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -1 0 1at 1605.062 kb on + strand, within PGA1_c15410at 1605.133 kb on + strand, within PGA1_c15410at 1605.200 kb on + strand, within PGA1_c15410at 1605.492 kb on + strand, within PGA1_c15420at 1605.502 kb on + strand, within PGA1_c15420at 1605.502 kb on - strand, within PGA1_c15420at 1605.741 kb on + strand, within PGA1_c15420at 1605.748 kb on - strand, within PGA1_c15420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
1,605,062 + PGA1_c15410 0.35 -0.6
1,605,133 + PGA1_c15410 0.50 -0.6
1,605,200 + PGA1_c15410 0.64 -0.6
1,605,492 + PGA1_c15420 0.21 +0.9
1,605,502 + PGA1_c15420 0.22 -1.0
1,605,502 - PGA1_c15420 0.22 +0.4
1,605,741 + PGA1_c15420 0.63 -0.0
1,605,748 - PGA1_c15420 0.65 +1.0

Or see this region's nucleotide sequence