Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15280 and PGA1_c15290 are separated by 80 nucleotides PGA1_c15290 and PGA1_c15300 are separated by 116 nucleotides PGA1_c15300 and PGA1_c15310 are separated by 148 nucleotides PGA1_c15310 and PGA1_c15320 are separated by 60 nucleotides
PGA1_c15280: PGA1_c15280 - Uncharacterized conserved protein, at 1,593,333 to 1,593,620
_c15280
PGA1_c15290: PGA1_c15290 - Lactoylglutathione lyase and related lyases, at 1,593,701 to 1,594,282
_c15290
PGA1_c15300: PGA1_c15300 - GTP-binding protein TypA, at 1,594,399 to 1,596,219
_c15300
PGA1_c15310: PGA1_c15310 - multidrug transporter EmrE, at 1,596,368 to 1,596,703
_c15310
PGA1_c15320: PGA1_c15320 - Predicted hydrolases of HD superfamily, at 1,596,764 to 1,597,936
_c15320
Position (kb)
1594
1595
1596
1597 Strain fitness (log2 ratio)
-2
-1
0
1 at 1593.519 kb on - strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.566 kb on - strand, within PGA1_c15280 at 1593.573 kb on - strand, within PGA1_c15280 at 1593.588 kb on - strand, within PGA1_c15280 at 1593.641 kb on + strand at 1593.649 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.732 kb on + strand at 1593.788 kb on + strand, within PGA1_c15290 at 1593.836 kb on + strand, within PGA1_c15290 at 1594.036 kb on - strand, within PGA1_c15290 at 1594.085 kb on + strand, within PGA1_c15290 at 1594.238 kb on + strand at 1594.267 kb on + strand at 1594.268 kb on - strand at 1594.275 kb on - strand at 1594.286 kb on + strand at 1594.318 kb on + strand at 1594.318 kb on + strand at 1594.326 kb on - strand at 1594.326 kb on - strand at 1594.416 kb on - strand at 1594.437 kb on + strand at 1594.709 kb on - strand, within PGA1_c15300 at 1594.724 kb on - strand, within PGA1_c15300 at 1594.777 kb on + strand, within PGA1_c15300 at 1594.824 kb on - strand, within PGA1_c15300 at 1594.903 kb on + strand, within PGA1_c15300 at 1594.922 kb on + strand, within PGA1_c15300 at 1594.943 kb on + strand, within PGA1_c15300 at 1594.943 kb on + strand, within PGA1_c15300 at 1594.951 kb on - strand, within PGA1_c15300 at 1595.233 kb on + strand, within PGA1_c15300 at 1595.241 kb on - strand, within PGA1_c15300 at 1595.505 kb on - strand, within PGA1_c15300 at 1595.523 kb on + strand, within PGA1_c15300 at 1595.523 kb on + strand, within PGA1_c15300 at 1595.531 kb on - strand, within PGA1_c15300 at 1595.737 kb on - strand, within PGA1_c15300 at 1595.739 kb on - strand, within PGA1_c15300 at 1596.019 kb on - strand, within PGA1_c15300 at 1596.123 kb on - strand at 1596.221 kb on - strand at 1596.316 kb on + strand at 1596.316 kb on + strand at 1596.319 kb on - strand at 1596.352 kb on + strand at 1596.352 kb on + strand at 1596.352 kb on + strand at 1596.358 kb on - strand at 1596.358 kb on - strand at 1596.360 kb on - strand at 1596.381 kb on - strand at 1596.383 kb on - strand at 1596.431 kb on + strand, within PGA1_c15310 at 1596.537 kb on + strand, within PGA1_c15310 at 1596.577 kb on + strand, within PGA1_c15310 at 1596.585 kb on - strand, within PGA1_c15310 at 1596.607 kb on + strand, within PGA1_c15310 at 1596.615 kb on - strand, within PGA1_c15310 at 1596.682 kb on + strand at 1596.704 kb on + strand at 1596.704 kb on + strand at 1596.712 kb on - strand at 1596.712 kb on - strand at 1596.762 kb on + strand at 1596.770 kb on - strand at 1596.815 kb on + strand at 1596.975 kb on - strand, within PGA1_c15320 at 1597.095 kb on + strand, within PGA1_c15320 at 1597.156 kb on + strand, within PGA1_c15320 at 1597.164 kb on - strand, within PGA1_c15320 at 1597.197 kb on + strand, within PGA1_c15320 at 1597.197 kb on + strand, within PGA1_c15320 at 1597.200 kb on - strand, within PGA1_c15320 at 1597.205 kb on - strand, within PGA1_c15320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,593,519 - PGA1_c15280 0.65 -1.0 1,593,558 + PGA1_c15280 0.78 +0.2 1,593,558 + PGA1_c15280 0.78 +0.4 1,593,566 - PGA1_c15280 0.81 +0.9 1,593,573 - PGA1_c15280 0.83 +0.2 1,593,588 - PGA1_c15280 0.89 -0.1 1,593,641 + +0.5 1,593,649 - -0.7 1,593,718 - -0.0 1,593,718 - -1.1 1,593,718 - +0.1 1,593,732 + -0.3 1,593,788 + PGA1_c15290 0.15 -0.8 1,593,836 + PGA1_c15290 0.23 -0.7 1,594,036 - PGA1_c15290 0.58 +1.1 1,594,085 + PGA1_c15290 0.66 +0.6 1,594,238 + +0.6 1,594,267 + +0.1 1,594,268 - +0.4 1,594,275 - -0.6 1,594,286 + -2.1 1,594,318 + -0.7 1,594,318 + +0.8 1,594,326 - -0.5 1,594,326 - -0.4 1,594,416 - +0.2 1,594,437 + -0.8 1,594,709 - PGA1_c15300 0.17 -0.8 1,594,724 - PGA1_c15300 0.18 -0.9 1,594,777 + PGA1_c15300 0.21 -0.6 1,594,824 - PGA1_c15300 0.23 -1.9 1,594,903 + PGA1_c15300 0.28 -1.8 1,594,922 + PGA1_c15300 0.29 +1.3 1,594,943 + PGA1_c15300 0.30 +0.4 1,594,943 + PGA1_c15300 0.30 -1.5 1,594,951 - PGA1_c15300 0.30 -0.9 1,595,233 + PGA1_c15300 0.46 -0.1 1,595,241 - PGA1_c15300 0.46 -1.0 1,595,505 - PGA1_c15300 0.61 -0.3 1,595,523 + PGA1_c15300 0.62 +0.3 1,595,523 + PGA1_c15300 0.62 -0.2 1,595,531 - PGA1_c15300 0.62 -2.1 1,595,737 - PGA1_c15300 0.73 -1.1 1,595,739 - PGA1_c15300 0.74 -1.1 1,596,019 - PGA1_c15300 0.89 -1.3 1,596,123 - -1.7 1,596,221 - -0.1 1,596,316 + -0.1 1,596,316 + +0.5 1,596,319 - +0.4 1,596,352 + -0.4 1,596,352 + +1.0 1,596,352 + +0.4 1,596,358 - +0.2 1,596,358 - +0.3 1,596,360 - -0.2 1,596,381 - +0.0 1,596,383 - +0.1 1,596,431 + PGA1_c15310 0.19 +0.2 1,596,537 + PGA1_c15310 0.50 -0.1 1,596,577 + PGA1_c15310 0.62 +0.0 1,596,585 - PGA1_c15310 0.65 -0.1 1,596,607 + PGA1_c15310 0.71 -0.4 1,596,615 - PGA1_c15310 0.74 -0.8 1,596,682 + +0.4 1,596,704 + -1.1 1,596,704 + -0.9 1,596,712 - +0.6 1,596,712 - -0.5 1,596,762 + +0.6 1,596,770 - -0.1 1,596,815 + +0.7 1,596,975 - PGA1_c15320 0.18 +0.7 1,597,095 + PGA1_c15320 0.28 +0.4 1,597,156 + PGA1_c15320 0.33 +1.0 1,597,164 - PGA1_c15320 0.34 -0.6 1,597,197 + PGA1_c15320 0.37 +0.0 1,597,197 + PGA1_c15320 0.37 -0.0 1,597,200 - PGA1_c15320 0.37 -0.6 1,597,205 - PGA1_c15320 0.38 +0.4
Or see this region's nucleotide sequence