Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14400 and PGA1_c14410 are separated by 56 nucleotides PGA1_c14410 and PGA1_c14420 overlap by 4 nucleotides PGA1_c14420 and PGA1_c14430 are separated by 33 nucleotides
PGA1_c14400: PGA1_c14400 - phosphoribosyl-AMP cyclohydrolase Hisl, at 1,496,892 to 1,497,269
_c14400
PGA1_c14410: PGA1_c14410 - putative glutamyl-tRNA synthetase, at 1,497,326 to 1,498,201
_c14410
PGA1_c14420: PGA1_c14420 - Methyltransferase domain., at 1,498,198 to 1,498,812
_c14420
PGA1_c14430: PGA1_c14430 - methylenetetrahydrofolate-tRNA-(uracil-5-)- methyltransferase, at 1,498,846 to 1,500,189
_c14430
Position (kb)
1498
1499 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1497.240 kb on + strand at 1497.263 kb on + strand at 1497.263 kb on + strand at 1497.263 kb on + strand at 1497.263 kb on + strand at 1497.264 kb on + strand at 1497.271 kb on - strand at 1497.359 kb on - strand at 1497.388 kb on + strand at 1497.550 kb on + strand, within PGA1_c14410 at 1497.621 kb on - strand, within PGA1_c14410 at 1497.623 kb on + strand, within PGA1_c14410 at 1497.631 kb on - strand, within PGA1_c14410 at 1497.668 kb on - strand, within PGA1_c14410 at 1497.912 kb on + strand, within PGA1_c14410 at 1497.920 kb on - strand, within PGA1_c14410 at 1497.922 kb on + strand, within PGA1_c14410 at 1497.930 kb on + strand, within PGA1_c14410 at 1497.938 kb on - strand, within PGA1_c14410 at 1497.953 kb on - strand, within PGA1_c14410 at 1498.009 kb on - strand, within PGA1_c14410 at 1498.031 kb on + strand, within PGA1_c14410 at 1498.051 kb on + strand, within PGA1_c14410 at 1498.055 kb on + strand, within PGA1_c14410 at 1498.055 kb on + strand, within PGA1_c14410 at 1498.073 kb on - strand, within PGA1_c14410 at 1498.073 kb on - strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.101 kb on + strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.109 kb on - strand, within PGA1_c14410 at 1498.132 kb on - strand at 1498.137 kb on + strand at 1498.289 kb on - strand, within PGA1_c14420 at 1498.344 kb on - strand, within PGA1_c14420 at 1498.370 kb on + strand, within PGA1_c14420 at 1498.370 kb on + strand, within PGA1_c14420 at 1498.490 kb on + strand, within PGA1_c14420 at 1498.531 kb on + strand, within PGA1_c14420 at 1498.557 kb on + strand, within PGA1_c14420 at 1498.565 kb on - strand, within PGA1_c14420 at 1498.596 kb on + strand, within PGA1_c14420 at 1498.609 kb on - strand, within PGA1_c14420 at 1498.609 kb on - strand, within PGA1_c14420 at 1498.667 kb on + strand, within PGA1_c14420 at 1498.764 kb on + strand at 1498.772 kb on + strand at 1498.788 kb on - strand at 1498.820 kb on + strand at 1498.828 kb on - strand at 1498.828 kb on - strand at 1498.895 kb on + strand at 1498.902 kb on - strand at 1498.903 kb on - strand at 1498.903 kb on - strand at 1498.982 kb on + strand, within PGA1_c14430 at 1498.990 kb on + strand, within PGA1_c14430 at 1498.990 kb on + strand, within PGA1_c14430 at 1498.999 kb on - strand, within PGA1_c14430 at 1499.077 kb on + strand, within PGA1_c14430 at 1499.130 kb on - strand, within PGA1_c14430 at 1499.152 kb on - strand, within PGA1_c14430 at 1499.182 kb on + strand, within PGA1_c14430 at 1499.200 kb on + strand, within PGA1_c14430 at 1499.200 kb on + strand, within PGA1_c14430 at 1499.292 kb on + strand, within PGA1_c14430 at 1499.298 kb on - strand, within PGA1_c14430 at 1499.339 kb on + strand, within PGA1_c14430 at 1499.339 kb on + strand, within PGA1_c14430 at 1499.347 kb on - strand, within PGA1_c14430 at 1499.347 kb on - strand, within PGA1_c14430 at 1499.347 kb on - strand, within PGA1_c14430 at 1499.523 kb on - strand, within PGA1_c14430 at 1499.563 kb on + strand, within PGA1_c14430 at 1499.612 kb on - strand, within PGA1_c14430 at 1499.617 kb on + strand, within PGA1_c14430 at 1499.635 kb on - strand, within PGA1_c14430 at 1499.653 kb on + strand, within PGA1_c14430 at 1499.684 kb on + strand, within PGA1_c14430 at 1499.749 kb on + strand, within PGA1_c14430 at 1499.765 kb on + strand, within PGA1_c14430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,497,240 + -0.1 1,497,263 + +0.4 1,497,263 + -0.4 1,497,263 + -0.2 1,497,263 + +0.7 1,497,264 + +0.3 1,497,271 - -0.4 1,497,359 - -0.0 1,497,388 + +0.6 1,497,550 + PGA1_c14410 0.26 +0.0 1,497,621 - PGA1_c14410 0.34 +0.5 1,497,623 + PGA1_c14410 0.34 +0.5 1,497,631 - PGA1_c14410 0.35 +0.6 1,497,668 - PGA1_c14410 0.39 +0.8 1,497,912 + PGA1_c14410 0.67 +0.0 1,497,920 - PGA1_c14410 0.68 +0.3 1,497,922 + PGA1_c14410 0.68 -0.4 1,497,930 + PGA1_c14410 0.69 +0.4 1,497,938 - PGA1_c14410 0.70 -0.5 1,497,953 - PGA1_c14410 0.72 +0.5 1,498,009 - PGA1_c14410 0.78 +0.5 1,498,031 + PGA1_c14410 0.80 +0.1 1,498,051 + PGA1_c14410 0.83 -0.2 1,498,055 + PGA1_c14410 0.83 +1.4 1,498,055 + PGA1_c14410 0.83 -0.0 1,498,073 - PGA1_c14410 0.85 +1.6 1,498,073 - PGA1_c14410 0.85 +0.0 1,498,101 + PGA1_c14410 0.88 +1.1 1,498,101 + PGA1_c14410 0.88 +0.6 1,498,101 + PGA1_c14410 0.88 -0.5 1,498,101 + PGA1_c14410 0.88 -0.0 1,498,101 + PGA1_c14410 0.88 +1.0 1,498,101 + PGA1_c14410 0.88 +0.0 1,498,101 + PGA1_c14410 0.88 -0.3 1,498,101 + PGA1_c14410 0.88 -1.3 1,498,101 + PGA1_c14410 0.88 +0.8 1,498,101 + PGA1_c14410 0.88 +0.3 1,498,101 + PGA1_c14410 0.88 +0.0 1,498,101 + PGA1_c14410 0.88 -0.7 1,498,101 + PGA1_c14410 0.88 -0.5 1,498,101 + PGA1_c14410 0.88 -0.9 1,498,101 + PGA1_c14410 0.88 -0.7 1,498,101 + PGA1_c14410 0.88 -0.1 1,498,101 + PGA1_c14410 0.88 -0.3 1,498,109 - PGA1_c14410 0.89 -0.9 1,498,109 - PGA1_c14410 0.89 -1.9 1,498,109 - PGA1_c14410 0.89 -0.0 1,498,109 - PGA1_c14410 0.89 +0.7 1,498,109 - PGA1_c14410 0.89 +0.2 1,498,109 - PGA1_c14410 0.89 -1.1 1,498,109 - PGA1_c14410 0.89 -1.1 1,498,132 - +0.8 1,498,137 + +1.2 1,498,289 - PGA1_c14420 0.15 +1.1 1,498,344 - PGA1_c14420 0.24 +0.8 1,498,370 + PGA1_c14420 0.28 -0.5 1,498,370 + PGA1_c14420 0.28 +0.3 1,498,490 + PGA1_c14420 0.47 +1.5 1,498,531 + PGA1_c14420 0.54 +1.9 1,498,557 + PGA1_c14420 0.58 -0.4 1,498,565 - PGA1_c14420 0.60 -2.2 1,498,596 + PGA1_c14420 0.65 +0.6 1,498,609 - PGA1_c14420 0.67 +1.0 1,498,609 - PGA1_c14420 0.67 +0.3 1,498,667 + PGA1_c14420 0.76 -1.5 1,498,764 + -1.3 1,498,772 + -0.8 1,498,788 - -0.7 1,498,820 + +0.2 1,498,828 - +0.6 1,498,828 - -0.2 1,498,895 + +0.2 1,498,902 - -0.1 1,498,903 - -0.9 1,498,903 - -0.5 1,498,982 + PGA1_c14430 0.10 +1.5 1,498,990 + PGA1_c14430 0.11 -0.7 1,498,990 + PGA1_c14430 0.11 +2.2 1,498,999 - PGA1_c14430 0.11 -1.7 1,499,077 + PGA1_c14430 0.17 +0.3 1,499,130 - PGA1_c14430 0.21 -0.1 1,499,152 - PGA1_c14430 0.23 +0.0 1,499,182 + PGA1_c14430 0.25 -0.5 1,499,200 + PGA1_c14430 0.26 +0.5 1,499,200 + PGA1_c14430 0.26 -0.1 1,499,292 + PGA1_c14430 0.33 -0.4 1,499,298 - PGA1_c14430 0.34 +1.1 1,499,339 + PGA1_c14430 0.37 +1.0 1,499,339 + PGA1_c14430 0.37 -0.4 1,499,347 - PGA1_c14430 0.37 +0.9 1,499,347 - PGA1_c14430 0.37 +0.8 1,499,347 - PGA1_c14430 0.37 +1.4 1,499,523 - PGA1_c14430 0.50 +1.0 1,499,563 + PGA1_c14430 0.53 +0.5 1,499,612 - PGA1_c14430 0.57 +0.1 1,499,617 + PGA1_c14430 0.57 +0.3 1,499,635 - PGA1_c14430 0.59 -0.2 1,499,653 + PGA1_c14430 0.60 +0.9 1,499,684 + PGA1_c14430 0.62 +0.3 1,499,749 + PGA1_c14430 0.67 -0.7 1,499,765 + PGA1_c14430 0.68 +1.8
Or see this region's nucleotide sequence