Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01160 and PGA1_c01170 are separated by 66 nucleotides PGA1_c01170 and PGA1_c01180 overlap by 8 nucleotides PGA1_c01180 and PGA1_c01190 are separated by 9 nucleotides
PGA1_c01160: PGA1_c01160 - sensor protein ChvG, at 109,316 to 111,028
_c01160
PGA1_c01170: PGA1_c01170 - HPr kinase/phosphorylase-like protein, at 111,095 to 111,469
_c01170
PGA1_c01180: PGA1_c01180 - Predicted P-loop-containing kinase, at 111,462 to 112,352
_c01180
PGA1_c01190: PGA1_c01190 - putative PTS system fructose subfamily IIA component, at 112,362 to 112,769
_c01190
Position (kb)
111
112 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 110.103 kb on + strand, within PGA1_c01160 at 110.132 kb on + strand, within PGA1_c01160 at 110.138 kb on + strand, within PGA1_c01160 at 110.140 kb on - strand, within PGA1_c01160 at 110.141 kb on - strand, within PGA1_c01160 at 110.144 kb on + strand, within PGA1_c01160 at 110.152 kb on - strand, within PGA1_c01160 at 110.177 kb on + strand, within PGA1_c01160 at 110.200 kb on + strand, within PGA1_c01160 at 110.289 kb on + strand, within PGA1_c01160 at 110.297 kb on + strand, within PGA1_c01160 at 110.308 kb on + strand, within PGA1_c01160 at 110.316 kb on - strand, within PGA1_c01160 at 110.316 kb on - strand, within PGA1_c01160 at 110.316 kb on - strand, within PGA1_c01160 at 110.318 kb on + strand, within PGA1_c01160 at 110.318 kb on + strand, within PGA1_c01160 at 110.318 kb on + strand, within PGA1_c01160 at 110.326 kb on - strand, within PGA1_c01160 at 110.326 kb on - strand, within PGA1_c01160 at 110.326 kb on - strand, within PGA1_c01160 at 110.414 kb on + strand, within PGA1_c01160 at 110.514 kb on + strand, within PGA1_c01160 at 110.522 kb on - strand, within PGA1_c01160 at 110.522 kb on - strand, within PGA1_c01160 at 110.544 kb on - strand, within PGA1_c01160 at 110.546 kb on + strand, within PGA1_c01160 at 110.564 kb on - strand, within PGA1_c01160 at 110.564 kb on - strand, within PGA1_c01160 at 110.629 kb on - strand, within PGA1_c01160 at 110.700 kb on - strand, within PGA1_c01160 at 110.701 kb on - strand, within PGA1_c01160 at 110.701 kb on - strand, within PGA1_c01160 at 110.734 kb on + strand, within PGA1_c01160 at 110.814 kb on + strand, within PGA1_c01160 at 110.822 kb on - strand, within PGA1_c01160 at 110.837 kb on + strand, within PGA1_c01160 at 110.845 kb on - strand, within PGA1_c01160 at 110.847 kb on - strand, within PGA1_c01160 at 110.881 kb on + strand at 110.886 kb on + strand at 110.894 kb on - strand at 110.899 kb on - strand at 110.935 kb on - strand at 110.936 kb on + strand at 110.936 kb on + strand at 110.936 kb on + strand at 110.936 kb on + strand at 110.936 kb on + strand at 110.941 kb on + strand at 110.941 kb on + strand at 110.944 kb on - strand at 110.944 kb on - strand at 110.944 kb on - strand at 110.944 kb on - strand at 110.949 kb on - strand at 110.949 kb on - strand at 110.949 kb on - strand at 110.980 kb on - strand at 111.041 kb on + strand at 111.048 kb on + strand at 111.048 kb on + strand at 111.049 kb on - strand at 111.051 kb on - strand at 111.056 kb on - strand at 111.094 kb on + strand at 111.094 kb on + strand at 111.169 kb on - strand, within PGA1_c01170 at 111.174 kb on - strand, within PGA1_c01170 at 111.176 kb on + strand, within PGA1_c01170 at 111.179 kb on - strand, within PGA1_c01170 at 111.258 kb on + strand, within PGA1_c01170 at 111.258 kb on + strand, within PGA1_c01170 at 111.258 kb on + strand, within PGA1_c01170 at 111.258 kb on + strand, within PGA1_c01170 at 111.258 kb on + strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.266 kb on - strand, within PGA1_c01170 at 111.276 kb on - strand, within PGA1_c01170 at 111.325 kb on + strand, within PGA1_c01170 at 111.325 kb on + strand, within PGA1_c01170 at 111.333 kb on - strand, within PGA1_c01170 at 111.423 kb on + strand, within PGA1_c01170 at 111.423 kb on + strand, within PGA1_c01170 at 111.423 kb on + strand, within PGA1_c01170 at 111.431 kb on - strand, within PGA1_c01170 at 111.431 kb on - strand, within PGA1_c01170 at 111.459 kb on - strand at 111.464 kb on - strand at 111.528 kb on + strand at 111.542 kb on - strand at 111.544 kb on - strand at 111.582 kb on + strand, within PGA1_c01180 at 111.621 kb on + strand, within PGA1_c01180 at 111.703 kb on - strand, within PGA1_c01180 at 111.802 kb on + strand, within PGA1_c01180 at 111.810 kb on - strand, within PGA1_c01180 at 111.861 kb on - strand, within PGA1_c01180 at 111.954 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.975 kb on + strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 112.058 kb on + strand, within PGA1_c01180 at 112.060 kb on - strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.087 kb on - strand, within PGA1_c01180 at 112.092 kb on - strand, within PGA1_c01180 at 112.092 kb on - strand, within PGA1_c01180 at 112.092 kb on - strand, within PGA1_c01180 at 112.104 kb on + strand, within PGA1_c01180 at 112.112 kb on + strand, within PGA1_c01180 at 112.122 kb on + strand, within PGA1_c01180 at 112.242 kb on + strand, within PGA1_c01180 at 112.250 kb on - strand, within PGA1_c01180 at 112.255 kb on - strand, within PGA1_c01180 at 112.263 kb on - strand, within PGA1_c01180 at 112.300 kb on + strand at 112.308 kb on - strand at 112.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 110,103 + PGA1_c01160 0.46 -1.5 110,132 + PGA1_c01160 0.48 -0.7 110,138 + PGA1_c01160 0.48 +0.2 110,140 - PGA1_c01160 0.48 +0.3 110,141 - PGA1_c01160 0.48 +0.1 110,144 + PGA1_c01160 0.48 -0.1 110,152 - PGA1_c01160 0.49 +0.9 110,177 + PGA1_c01160 0.50 -1.0 110,200 + PGA1_c01160 0.52 -0.3 110,289 + PGA1_c01160 0.57 -0.8 110,297 + PGA1_c01160 0.57 -0.3 110,308 + PGA1_c01160 0.58 +0.2 110,316 - PGA1_c01160 0.58 -0.5 110,316 - PGA1_c01160 0.58 -1.1 110,316 - PGA1_c01160 0.58 -1.8 110,318 + PGA1_c01160 0.58 -0.1 110,318 + PGA1_c01160 0.58 +0.1 110,318 + PGA1_c01160 0.58 +0.7 110,326 - PGA1_c01160 0.59 -1.1 110,326 - PGA1_c01160 0.59 +0.3 110,326 - PGA1_c01160 0.59 -0.1 110,414 + PGA1_c01160 0.64 -1.8 110,514 + PGA1_c01160 0.70 -0.0 110,522 - PGA1_c01160 0.70 +0.4 110,522 - PGA1_c01160 0.70 -1.1 110,544 - PGA1_c01160 0.72 +0.2 110,546 + PGA1_c01160 0.72 -0.3 110,564 - PGA1_c01160 0.73 +0.5 110,564 - PGA1_c01160 0.73 -0.2 110,629 - PGA1_c01160 0.77 +0.9 110,700 - PGA1_c01160 0.81 -1.1 110,701 - PGA1_c01160 0.81 -1.5 110,701 - PGA1_c01160 0.81 -0.5 110,734 + PGA1_c01160 0.83 +0.5 110,814 + PGA1_c01160 0.87 -0.0 110,822 - PGA1_c01160 0.88 -0.5 110,837 + PGA1_c01160 0.89 -0.2 110,845 - PGA1_c01160 0.89 +0.8 110,847 - PGA1_c01160 0.89 +0.6 110,881 + +0.3 110,886 + -1.3 110,894 - -0.0 110,899 - +0.8 110,935 - +0.2 110,936 + -0.3 110,936 + +1.1 110,936 + +0.4 110,936 + +0.0 110,936 + -1.2 110,941 + +0.8 110,941 + -1.1 110,944 - +1.2 110,944 - -0.1 110,944 - -1.3 110,944 - +0.6 110,949 - -0.4 110,949 - -1.3 110,949 - -0.4 110,980 - +1.7 111,041 + -0.3 111,048 + -0.5 111,048 + -0.7 111,049 - +0.1 111,051 - +0.3 111,056 - +0.3 111,094 + -0.6 111,094 + -1.3 111,169 - PGA1_c01170 0.20 -0.6 111,174 - PGA1_c01170 0.21 -0.3 111,176 + PGA1_c01170 0.22 -0.1 111,179 - PGA1_c01170 0.22 -1.2 111,258 + PGA1_c01170 0.43 -0.0 111,258 + PGA1_c01170 0.43 -0.7 111,258 + PGA1_c01170 0.43 +0.6 111,258 + PGA1_c01170 0.43 -0.3 111,258 + PGA1_c01170 0.43 -0.2 111,266 - PGA1_c01170 0.46 -1.7 111,266 - PGA1_c01170 0.46 -0.9 111,266 - PGA1_c01170 0.46 -1.5 111,266 - PGA1_c01170 0.46 -1.1 111,266 - PGA1_c01170 0.46 -1.6 111,266 - PGA1_c01170 0.46 -0.6 111,266 - PGA1_c01170 0.46 +1.8 111,276 - PGA1_c01170 0.48 -0.6 111,325 + PGA1_c01170 0.61 +0.1 111,325 + PGA1_c01170 0.61 -0.5 111,333 - PGA1_c01170 0.63 -0.2 111,423 + PGA1_c01170 0.87 -2.1 111,423 + PGA1_c01170 0.87 -0.7 111,423 + PGA1_c01170 0.87 -0.3 111,431 - PGA1_c01170 0.90 +0.7 111,431 - PGA1_c01170 0.90 -0.3 111,459 - -0.6 111,464 - -0.1 111,528 + +0.4 111,542 - -0.1 111,544 - -1.5 111,582 + PGA1_c01180 0.13 -1.5 111,621 + PGA1_c01180 0.18 -2.0 111,703 - PGA1_c01180 0.27 +0.3 111,802 + PGA1_c01180 0.38 -1.1 111,810 - PGA1_c01180 0.39 +0.5 111,861 - PGA1_c01180 0.45 +0.3 111,954 + PGA1_c01180 0.55 +0.9 111,968 + PGA1_c01180 0.57 +0.4 111,968 + PGA1_c01180 0.57 +1.4 111,968 + PGA1_c01180 0.57 -0.1 111,968 + PGA1_c01180 0.57 -0.1 111,968 + PGA1_c01180 0.57 +0.5 111,968 + PGA1_c01180 0.57 -0.6 111,968 + PGA1_c01180 0.57 -0.1 111,968 + PGA1_c01180 0.57 +0.2 111,968 + PGA1_c01180 0.57 -0.6 111,968 + PGA1_c01180 0.57 -0.4 111,975 + PGA1_c01180 0.58 -0.5 111,976 - PGA1_c01180 0.58 +0.1 111,976 - PGA1_c01180 0.58 +0.9 111,976 - PGA1_c01180 0.58 +0.3 111,976 - PGA1_c01180 0.58 +1.7 111,976 - PGA1_c01180 0.58 -0.1 112,058 + PGA1_c01180 0.67 +0.7 112,060 - PGA1_c01180 0.67 +0.1 112,084 + PGA1_c01180 0.70 -1.5 112,084 + PGA1_c01180 0.70 +0.5 112,084 + PGA1_c01180 0.70 -0.4 112,084 + PGA1_c01180 0.70 +0.3 112,084 + PGA1_c01180 0.70 +0.0 112,084 + PGA1_c01180 0.70 -0.4 112,084 + PGA1_c01180 0.70 -0.4 112,084 + PGA1_c01180 0.70 +0.6 112,084 + PGA1_c01180 0.70 +0.3 112,087 - PGA1_c01180 0.70 +1.0 112,092 - PGA1_c01180 0.71 +1.5 112,092 - PGA1_c01180 0.71 +0.5 112,092 - PGA1_c01180 0.71 +1.0 112,104 + PGA1_c01180 0.72 -0.4 112,112 + PGA1_c01180 0.73 +2.0 112,122 + PGA1_c01180 0.74 -1.3 112,242 + PGA1_c01180 0.88 +1.7 112,250 - PGA1_c01180 0.88 +0.3 112,255 - PGA1_c01180 0.89 +0.7 112,263 - PGA1_c01180 0.90 +0.3 112,300 + +0.5 112,308 - -0.9 112,312 + +1.4
Or see this region's nucleotide sequence