Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11160 and PGA1_c11170 overlap by 8 nucleotides PGA1_c11170 and PGA1_c11180 overlap by 1 nucleotides PGA1_c11180 and PGA1_c11190 are separated by 103 nucleotides PGA1_c11190 and PGA1_c11200 are separated by 23 nucleotides
PGA1_c11160: PGA1_c11160 - putative beta-hexosaminidase, at 1,154,406 to 1,155,410
_c11160
PGA1_c11170: PGA1_c11170 - segregation and condensation protein A, at 1,155,403 to 1,156,194
_c11170
PGA1_c11180: PGA1_c11180 - segregation and condensation protein B, at 1,156,194 to 1,156,856
_c11180
PGA1_c11190: PGA1_c11190 - hypothetical protein, at 1,156,960 to 1,157,172
_c11190
PGA1_c11200: PGA1_c11200 - putative deoxycytidine triphosphate deaminase, at 1,157,196 to 1,158,305
_c11200
Position (kb)
1156
1157 Strain fitness (log2 ratio)
-2
-1
0
1 at 1155.398 kb on + strand at 1155.415 kb on + strand at 1155.417 kb on + strand at 1155.839 kb on - strand, within PGA1_c11170 at 1156.024 kb on - strand, within PGA1_c11170 at 1156.060 kb on - strand, within PGA1_c11170 at 1156.084 kb on + strand, within PGA1_c11170 at 1156.208 kb on + strand at 1156.230 kb on + strand at 1156.447 kb on + strand, within PGA1_c11180 at 1156.544 kb on + strand, within PGA1_c11180 at 1156.590 kb on - strand, within PGA1_c11180 at 1156.834 kb on + strand at 1156.929 kb on - strand at 1156.929 kb on - strand at 1156.988 kb on - strand, within PGA1_c11190 at 1156.990 kb on - strand, within PGA1_c11190 at 1156.999 kb on + strand, within PGA1_c11190 at 1157.037 kb on + strand, within PGA1_c11190 at 1157.037 kb on + strand, within PGA1_c11190 at 1157.236 kb on + strand at 1157.319 kb on - strand, within PGA1_c11200 at 1157.496 kb on + strand, within PGA1_c11200 at 1157.550 kb on + strand, within PGA1_c11200 at 1157.558 kb on - strand, within PGA1_c11200 at 1157.566 kb on - strand, within PGA1_c11200 at 1157.581 kb on - strand, within PGA1_c11200 at 1157.586 kb on - strand, within PGA1_c11200 at 1157.622 kb on + strand, within PGA1_c11200 at 1157.630 kb on - strand, within PGA1_c11200 at 1157.697 kb on - strand, within PGA1_c11200 at 1157.701 kb on - strand, within PGA1_c11200 at 1157.777 kb on - strand, within PGA1_c11200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,155,398 + +0.1 1,155,415 + +0.4 1,155,417 + +0.6 1,155,839 - PGA1_c11170 0.55 +1.0 1,156,024 - PGA1_c11170 0.78 -0.1 1,156,060 - PGA1_c11170 0.83 +0.3 1,156,084 + PGA1_c11170 0.86 -0.4 1,156,208 + +0.1 1,156,230 + -0.7 1,156,447 + PGA1_c11180 0.38 +0.3 1,156,544 + PGA1_c11180 0.53 -1.6 1,156,590 - PGA1_c11180 0.60 -1.3 1,156,834 + +0.0 1,156,929 - -0.7 1,156,929 - -0.4 1,156,988 - PGA1_c11190 0.13 -0.1 1,156,990 - PGA1_c11190 0.14 +0.3 1,156,999 + PGA1_c11190 0.18 -0.8 1,157,037 + PGA1_c11190 0.36 -1.8 1,157,037 + PGA1_c11190 0.36 -0.6 1,157,236 + -0.4 1,157,319 - PGA1_c11200 0.11 -1.3 1,157,496 + PGA1_c11200 0.27 -0.9 1,157,550 + PGA1_c11200 0.32 +0.3 1,157,558 - PGA1_c11200 0.33 -2.0 1,157,566 - PGA1_c11200 0.33 +1.0 1,157,581 - PGA1_c11200 0.35 -0.5 1,157,586 - PGA1_c11200 0.35 -0.3 1,157,622 + PGA1_c11200 0.38 -1.0 1,157,630 - PGA1_c11200 0.39 -0.1 1,157,697 - PGA1_c11200 0.45 -1.8 1,157,701 - PGA1_c11200 0.45 -0.4 1,157,777 - PGA1_c11200 0.52 -1.0
Or see this region's nucleotide sequence