Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3477 and Dsui_3478 are separated by 246 nucleotides Dsui_3478 and Dsui_3479 are separated by 105 nucleotides Dsui_3479 and Dsui_3480 are separated by 32 nucleotides
Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106
_3477
Dsui_3478: Dsui_3478 - hypothetical protein, at 3,742,353 to 3,742,664
_3478
Dsui_3479: Dsui_3479 - single stranded DNA-binding protein, at 3,742,770 to 3,743,264
_3479
Dsui_3480: Dsui_3480 - arabinose efflux permease family protein, at 3,743,297 to 3,744,646
_3480
Position (kb)
3742
3743 Strain fitness (log2 ratio)
-2
-1
0
1 at 3741.405 kb on - strand at 3741.499 kb on + strand at 3741.581 kb on + strand, within Dsui_3477 at 3741.600 kb on + strand, within Dsui_3477 at 3741.719 kb on + strand, within Dsui_3477 at 3741.819 kb on + strand at 3741.952 kb on + strand, within Dsui_3477 at 3742.035 kb on + strand at 3742.048 kb on + strand at 3742.088 kb on + strand at 3742.096 kb on - strand at 3742.105 kb on + strand at 3742.118 kb on - strand at 3742.169 kb on + strand at 3742.172 kb on - strand at 3742.252 kb on + strand at 3742.252 kb on + strand at 3742.260 kb on - strand at 3742.260 kb on - strand at 3742.294 kb on - strand at 3742.296 kb on + strand at 3742.304 kb on - strand at 3742.318 kb on + strand at 3742.326 kb on - strand at 3742.326 kb on - strand at 3742.328 kb on + strand at 3742.331 kb on - strand at 3742.559 kb on + strand, within Dsui_3478 at 3742.586 kb on - strand, within Dsui_3478 at 3742.656 kb on - strand at 3742.658 kb on + strand at 3742.688 kb on - strand at 3743.317 kb on - strand at 3743.329 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,741,405 - +0.5 3,741,499 + +0.5 3,741,581 + Dsui_3477 0.58 -0.5 3,741,600 + Dsui_3477 0.60 +0.5 3,741,719 + Dsui_3477 0.69 -1.1 3,741,819 + +0.5 3,741,952 + Dsui_3477 0.88 -2.1 3,742,035 + -1.5 3,742,048 + +0.5 3,742,088 + +0.5 3,742,096 - -0.5 3,742,105 + -2.1 3,742,118 - +0.5 3,742,169 + -1.1 3,742,172 - -2.7 3,742,252 + -1.1 3,742,252 + -0.5 3,742,260 - -1.5 3,742,260 - +0.5 3,742,294 - +0.5 3,742,296 + -0.5 3,742,304 - +0.5 3,742,318 + +0.5 3,742,326 - -2.3 3,742,326 - -1.1 3,742,328 + +0.5 3,742,331 - +0.5 3,742,559 + Dsui_3478 0.66 -2.1 3,742,586 - Dsui_3478 0.75 -2.3 3,742,656 - +0.5 3,742,658 + -1.1 3,742,688 - +0.5 3,743,317 - -0.9 3,743,329 + -0.5
Or see this region's nucleotide sequence