Strain Fitness in Dechlorosoma suillum PS around Dsui_3478

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3477 and Dsui_3478 are separated by 246 nucleotidesDsui_3478 and Dsui_3479 are separated by 105 nucleotidesDsui_3479 and Dsui_3480 are separated by 32 nucleotides Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106 _3477 Dsui_3478: Dsui_3478 - hypothetical protein, at 3,742,353 to 3,742,664 _3478 Dsui_3479: Dsui_3479 - single stranded DNA-binding protein, at 3,742,770 to 3,743,264 _3479 Dsui_3480: Dsui_3480 - arabinose efflux permease family protein, at 3,743,297 to 3,744,646 _3480 Position (kb) 3742 3743Strain fitness (log2 ratio) -2 -1 0 1at 3741.405 kb on - strandat 3741.499 kb on + strandat 3741.581 kb on + strand, within Dsui_3477at 3741.600 kb on + strand, within Dsui_3477at 3741.719 kb on + strand, within Dsui_3477at 3741.819 kb on + strandat 3741.952 kb on + strand, within Dsui_3477at 3742.035 kb on + strandat 3742.048 kb on + strandat 3742.088 kb on + strandat 3742.096 kb on - strandat 3742.105 kb on + strandat 3742.118 kb on - strandat 3742.169 kb on + strandat 3742.172 kb on - strandat 3742.252 kb on + strandat 3742.252 kb on + strandat 3742.260 kb on - strandat 3742.260 kb on - strandat 3742.294 kb on - strandat 3742.296 kb on + strandat 3742.304 kb on - strandat 3742.318 kb on + strandat 3742.326 kb on - strandat 3742.326 kb on - strandat 3742.328 kb on + strandat 3742.331 kb on - strandat 3742.559 kb on + strand, within Dsui_3478at 3742.586 kb on - strand, within Dsui_3478at 3742.656 kb on - strandat 3742.658 kb on + strandat 3742.688 kb on - strandat 3743.317 kb on - strandat 3743.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,741,405 - +0.5
3,741,499 + +0.5
3,741,581 + Dsui_3477 0.58 -0.5
3,741,600 + Dsui_3477 0.60 +0.5
3,741,719 + Dsui_3477 0.69 -1.1
3,741,819 + +0.5
3,741,952 + Dsui_3477 0.88 -2.1
3,742,035 + -1.5
3,742,048 + +0.5
3,742,088 + +0.5
3,742,096 - -0.5
3,742,105 + -2.1
3,742,118 - +0.5
3,742,169 + -1.1
3,742,172 - -2.7
3,742,252 + -1.1
3,742,252 + -0.5
3,742,260 - -1.5
3,742,260 - +0.5
3,742,294 - +0.5
3,742,296 + -0.5
3,742,304 - +0.5
3,742,318 + +0.5
3,742,326 - -2.3
3,742,326 - -1.1
3,742,328 + +0.5
3,742,331 - +0.5
3,742,559 + Dsui_3478 0.66 -2.1
3,742,586 - Dsui_3478 0.75 -2.3
3,742,656 - +0.5
3,742,658 + -1.1
3,742,688 - +0.5
3,743,317 - -0.9
3,743,329 + -0.5

Or see this region's nucleotide sequence