Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3475 and Dsui_3476 are separated by 11 nucleotides Dsui_3476 and Dsui_3477 are separated by 15 nucleotides Dsui_3477 and Dsui_3478 are separated by 246 nucleotides Dsui_3478 and Dsui_3479 are separated by 105 nucleotides
Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301
_3475
Dsui_3476: Dsui_3476 - chemotaxis signal transduction protein, at 3,740,313 to 3,740,831
_3476
Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106
_3477
Dsui_3478: Dsui_3478 - hypothetical protein, at 3,742,353 to 3,742,664
_3478
Dsui_3479: Dsui_3479 - single stranded DNA-binding protein, at 3,742,770 to 3,743,264
_3479
Position (kb)
3740
3741
3742
3743 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3739.847 kb on - strand, within Dsui_3475 at 3740.005 kb on - strand at 3740.007 kb on + strand, within Dsui_3475 at 3740.303 kb on - strand at 3740.345 kb on - strand at 3740.367 kb on - strand at 3740.382 kb on - strand, within Dsui_3476 at 3740.382 kb on - strand, within Dsui_3476 at 3740.444 kb on + strand, within Dsui_3476 at 3740.485 kb on + strand, within Dsui_3476 at 3740.647 kb on - strand, within Dsui_3476 at 3740.760 kb on + strand at 3740.802 kb on + strand at 3740.810 kb on - strand at 3740.884 kb on + strand at 3740.931 kb on - strand at 3740.934 kb on + strand at 3741.277 kb on + strand, within Dsui_3477 at 3741.282 kb on + strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.405 kb on - strand at 3741.499 kb on + strand at 3741.581 kb on + strand, within Dsui_3477 at 3741.600 kb on + strand, within Dsui_3477 at 3741.719 kb on + strand, within Dsui_3477 at 3741.819 kb on + strand at 3741.952 kb on + strand, within Dsui_3477 at 3742.035 kb on + strand at 3742.048 kb on + strand at 3742.088 kb on + strand at 3742.096 kb on - strand at 3742.105 kb on + strand at 3742.118 kb on - strand at 3742.169 kb on + strand at 3742.172 kb on - strand at 3742.252 kb on + strand at 3742.252 kb on + strand at 3742.260 kb on - strand at 3742.260 kb on - strand at 3742.294 kb on - strand at 3742.296 kb on + strand at 3742.304 kb on - strand at 3742.318 kb on + strand at 3742.326 kb on - strand at 3742.326 kb on - strand at 3742.328 kb on + strand at 3742.331 kb on - strand at 3742.559 kb on + strand, within Dsui_3478 at 3742.586 kb on - strand, within Dsui_3478 at 3742.656 kb on - strand at 3742.658 kb on + strand at 3742.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,739,847 - Dsui_3475 0.79 -1.5 3,740,005 - +0.5 3,740,007 + Dsui_3475 0.86 -2.1 3,740,303 - +0.5 3,740,345 - -1.8 3,740,367 - +0.5 3,740,382 - Dsui_3476 0.13 +0.5 3,740,382 - Dsui_3476 0.13 +0.5 3,740,444 + Dsui_3476 0.25 +0.5 3,740,485 + Dsui_3476 0.33 -0.5 3,740,647 - Dsui_3476 0.64 +0.5 3,740,760 + +0.5 3,740,802 + -1.1 3,740,810 - +0.5 3,740,884 + +0.5 3,740,931 - -0.5 3,740,934 + +0.5 3,741,277 + Dsui_3477 0.34 -3.0 3,741,282 + Dsui_3477 0.35 -3.0 3,741,285 - Dsui_3477 0.35 -1.5 3,741,285 - Dsui_3477 0.35 -0.5 3,741,285 - Dsui_3477 0.35 +0.5 3,741,285 - Dsui_3477 0.35 -0.5 3,741,405 - +0.5 3,741,499 + +0.5 3,741,581 + Dsui_3477 0.58 -0.5 3,741,600 + Dsui_3477 0.60 +0.5 3,741,719 + Dsui_3477 0.69 -1.1 3,741,819 + +0.5 3,741,952 + Dsui_3477 0.88 -2.1 3,742,035 + -1.5 3,742,048 + +0.5 3,742,088 + +0.5 3,742,096 - -0.5 3,742,105 + -2.1 3,742,118 - +0.5 3,742,169 + -1.1 3,742,172 - -2.7 3,742,252 + -1.1 3,742,252 + -0.5 3,742,260 - -1.5 3,742,260 - +0.5 3,742,294 - +0.5 3,742,296 + -0.5 3,742,304 - +0.5 3,742,318 + +0.5 3,742,326 - -2.3 3,742,326 - -1.1 3,742,328 + +0.5 3,742,331 - +0.5 3,742,559 + Dsui_3478 0.66 -2.1 3,742,586 - Dsui_3478 0.75 -2.3 3,742,656 - +0.5 3,742,658 + -1.1 3,742,688 - +0.5
Or see this region's nucleotide sequence